CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18862	Soybean	golgi, plasma membrane, vacuole	38.6	87.76
KRH10575	Soybean	plastid	87.25	86.48
Os08t0481800-01	Rice	plastid	34.83	81.17
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	48.29	79.82
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	48.11	79.53
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	14.18	78.22
Bra024282.1-P	Field mustard	plastid	74.69	74.95
CDY43805	Canola	plastid	74.51	74.77
AT5G64290.1	Thale cress	plastid	74.87	74.07
CDX84512	Canola	plastid	74.51	73.84
Bra037771.1-P	Field mustard	plastid	74.15	73.36
CDY18717	Canola	plastid	73.97	73.18
CDX81219	Canola	plastid	72.89	73.02
VIT_03s0017g00640.t01	Wine grape	plastid	73.07	72.16
PGSC0003DMT400032652	Potato	plastid	73.25	69.86
TraesCS7A01G285000.1	Wheat	golgi	69.48	69.6
TraesCS7D01G283000.1	Wheat	unclear	69.48	69.6
EES14336	Sorghum	golgi, plastid, vacuole	65.71	69.32
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	69.12	69.24
HORVU7Hr1G063220.1	Barley	plastid	69.12	69.24
TraesCS5A01G248900.1	Wheat	golgi, unclear	67.86	69.23
Zm00001d031253_P001	Maize	plastid	68.4	69.15
Solyc01g105540.2.1	Tomato	plastid	70.74	69.12
TraesCS5B01G246600.1	Wheat	plastid	68.04	68.91
EES15485	Sorghum	plastid	68.04	68.78
Zm00001d005950_P001	Maize	plastid	68.4	68.77
EER96900	Sorghum	plastid	68.22	68.22
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	67.33	68.18
GSMUA_Achr10P...	Banana	mitochondrion	67.33	67.45
EES04490	Sorghum	plastid	66.43	65.72
AT5G64280.1	Thale cress	plastid	64.45	65.39
HORVU5Hr1G070230.1	Barley	plastid	66.79	65.03
Bra031926.1-P	Field mustard	plastid	64.27	64.39
CDY31328	Canola	plastid	63.38	63.38
PGSC0003DMT400017518	Potato	plastid	26.57	54.61
Os09t0469950-00	Rice	plasma membrane	27.11	53.55
CDY46791	Canola	plasma membrane	62.66	53.12
Zm00001d020803_P001	Maize	peroxisome	12.21	40.96
KRH24714	Soybean	plastid	39.32	39.6
KRH29718	Soybean	plastid	39.5	39.29

Protein Annotations

EntrezGene:100782873	MapMan:24.2.7.1.2	EMBL:ACUP02004902	InterPro:CitT-rel	EnsemblPlantsGene:GLYMA_08G177400	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	UniProt:I1KUB5	EnsemblPlants:KRH43882	ProteinID:KRH43882	ProteinID:KRH43882.1
PFAM:PF00939	PANTHER:PTHR42826	PANTHER:PTHR42826:SF1	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix
UniParc:UPI0001CAB8A3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:14212481..14216444

Molecular Weight (calculated)

59993.7 Da

IEP (calculated)

9.551

GRAVY (calculated)

0.581

Length

557 amino acids

Sequence
(BLAST)

001: MESYALHSLS TSFSRFSQLH HPPPPVISRS QFNQSQSLSL RSPITISQRF SFPSSTFKFN PFSKPHYPIQ ASPSSPPPPP PPTPIQGAKP IPFIISISIG
101: LIVRFLVPKP VQVTPEAWQL LSIFLSTIAG LVLSPLPVGA WAFLGLTASV VTKTLTFTEA FGAFTNEVIW LIVISFFFAR GFVKTGLGDR IATFFVKWMG
201: KSTLGLSYGL TFSEVLIAPA MPSTTARAGG VFLPIIKSLS LSAGSEPASP TSKKLGAYLI QNQFQSAGNS SALFLTAAAQ NLLCLKLAEE LGVIVPNPWV
301: TWFKAASLPA IVCLLLTPLI LYKLYPPVIK DTPEAPALAA KKLESMGPVT KNEWIMVGTM LLAVSLWIFG DTIGIASAVA AMIGLSILLL LGVLDWNDCL
401: NEKSAWDTLA WFAILVGMAS QLTNLGIVSW MSDCVADNLR SFSLSWPASL AVLQAAYFFI HYLFASQTGH VGALYSAFLA MHRAAGVPGI LAALALGYNT
501: NLFGAITHYS SGQAAVYYGA GYVDLPDIFK MGFIMAFINA IIWGGVGSVW WKFLGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.