CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.93	85.52
KRH29718	Soybean	plastid	85.9	84.82
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.03	83.84
GSMUA_Achr4P03580_001	Banana	plastid	72.88	78.86
CDY53969	Canola	plastid	77.03	77.17
AT5G12860.1	Thale cress	plastid	76.85	76.3
PGSC0003DMT400018994	Potato	plastid	75.41	75.27
Solyc11g065830.1.1	Tomato	plastid	75.41	75.14
VIT_06s0004g02120.t01	Wine grape	plastid	75.95	75.13
CDX97208	Canola	plastid	76.31	74.17
Os12t0515400-01	Rice	plastid	72.69	73.36
TraesCS5A01G100600.1	Wheat	golgi, plastid	73.06	72.79
TraesCS5B01G105700.1	Wheat	plastid	72.88	72.35
Zm00001d023929_P001	Maize	plastid	73.42	70.24
HORVU5Hr1G027720.1	Barley	plastid	71.97	69.58
EES16067	Sorghum	plastid	73.24	69.35
GSMUA_Achr7P27130_001	Banana	plastid	68.17	69.3
KRH10575	Soybean	plastid	40.14	39.5
KRH43882	Soybean	endoplasmic reticulum, plastid	39.6	39.32
KRH18862	Soybean	golgi, plasma membrane, vacuole	15.55	35.1

Protein Annotations

EntrezGene:100793559	MapMan:24.2.7.1.2	EMBL:ACUP02007184	InterPro:CitT-rel	EnsemblPlantsGene:GLYMA_12G058000	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	UniProt:I1LQJ9	EnsemblPlants:KRH24714	ProteinID:KRH24714	ProteinID:KRH24714.1
PFAM:PF00939	PANTHER:PTHR42826	PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix
UniParc:UPI000233C71B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:4219805..4223573

Molecular Weight (calculated)

58662.8 Da

IEP (calculated)

10.368

GRAVY (calculated)

0.775

Length

553 amino acids

Sequence
(BLAST)

001: MASVALTTTA LPSLRLRRNT TATLKPNRHA SISLKPNLHA SISSFPNFSL KKPHLISTRK PSALTVRASA ASITPAPAPV QPWQGAAIKP LIASIATGVI
101: LWFSPVPAGV NRNAWQLLAI FLGTIVGIIT QPLPLGAVAI LGLGVSVLTK TLPFAAAFSG FGDPIPWLIA LAFFFAKGFI KTGLGNRVAY QFVKLFGSSS
201: LGLGYSLVFS EALLAPAIPS VSARAGGIFL PLVKALCVAC GSNAGDGTEH RLGAWLMLTC FQTSVITSAM FLTAMAANPL CATLTQNSIN QTIGWLDWAK
301: AAIVPGLASL VLVPLILYVI YPPTLKSSPD APKLAKEKLE KMGPMTTNEK IMTATLFLTV GLWVFGGLLN IDAVSAAILG LSVLLVTGVV TWKECLAEGV
401: AWDTLTWFAA LIAMAGYLNK YGLISWFSQT VVKFVGGLGL SWQLSFGILV LLYFYSHYFF ASGAAHIGAM FTAFLSVATA LGTPPFFGAI VLSFLSNLMG
501: GLTHYGIGSA PVFFGANYVP LAKWWGYGFL ISIVNIIIWL GLGGVWWKFI GLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.