CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	47.43	93.27
Zm00001d023929_P001	Maize	plastid	83.9	84.78
TraesCS5A01G100600.1	Wheat	golgi, plastid	78.42	82.52
TraesCS5B01G105700.1	Wheat	plastid	78.25	82.05
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	41.44	81.48
Os12t0515400-01	Rice	plastid	76.37	81.39
HORVU5Hr1G027720.1	Barley	plastid	77.57	79.2
GSMUA_Achr4P03580_001	Banana	plastid	66.78	76.32
CDY53969	Canola	plastid	70.89	75.0
PGSC0003DMT400018994	Potato	plastid	70.21	74.01
Solyc11g065830.1.1	Tomato	plastid	70.03	73.69
AT5G12860.1	Thale cress	plastid	69.86	73.25
KRH24714	Soybean	plastid	69.35	73.24
KRH29718	Soybean	plastid	69.86	72.86
CDX97208	Canola	plastid	70.89	72.76
VIT_06s0004g02120.t01	Wine grape	plastid	69.01	72.09
GSMUA_Achr7P27130_001	Banana	plastid	61.99	66.54
EES14336	Sorghum	golgi, plastid, vacuole	37.84	41.86
EES15485	Sorghum	plastid	38.7	41.02
EES04490	Sorghum	plastid	38.7	40.14
EER96900	Sorghum	plastid	37.5	39.32

Protein Annotations

MapMan:24.2.7.1.2	EntrezGene:8067215	UniProt:C5YP76	InterPro:CitT-rel	EnsemblPlants:EES16067	ProteinID:EES16067
ProteinID:EES16067.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	PFAM:PF00939	PANTHER:PTHR42826
PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	EnsemblPlantsGene:SORBI_3008G112300	unigene:Sbi.17219	TIGRFAMs:TIGR00785	TMHMM:TMhelix
UniParc:UPI0001A883B8	RefSeq:XP_002442229.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:51918409..51923763

Molecular Weight (calculated)

60191.2 Da

IEP (calculated)

10.144

GRAVY (calculated)

0.767

Length

584 amino acids

Sequence
(BLAST)

001: MASSTAASPL TCHHLGSVGA RPSLPSLSFG PLRRRSSSKP ISLSHSLPSK PSSLAPPPAA SSSASASSSS RRGLTPVSAS ASAAAAPAPD PVPAPAPAPA
101: PAPAPAAPPK KPALQGAAIK PLLASLAIGV LIWFLPAPAG VPRNAWQLLA IFLSTIVGII TQPLPLGAVA LLGLGAAVLT KTLTFAAAFS AFGDPIPWLI
201: ALAFFFARGF IKTGLGSRVA YAFVAAFGSS SLGLGYSLVF AEALLAPAIP SVSARAGGIF LPLVKSLCEA CGSRAGDGTE RKLGAWLMLT CFQTSVVSSA
301: MFLTAMAANP LSANLTAATI GQGIGWTLWA KAAIVPGLLS LVLVPLILYV IYPPEVKASP DAPRLAKERL AKMGPMSTEE KIMAGTLLLT VGLWIFGGML
401: SVDAVSAAIL GLGVLLITGV VTWKECLAES VAWDTLTWFA ALIAMAGYLN KYGFISWFSE TVVKFVGGLG LSWQASFGVL VLLYFYSHYF FASGAAHIGA
501: MFAAFLSVAS ALGTPSLFAA MVLSFLSNLM GGTTHYGIGS APVFYGAGYV PLAQWWGYGF VISIVNIIIW LGAGGFWWKM IGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.