Factsheet for VIT_06s0004g02120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	47.23	88.89
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.36	83.5
AT5G12860.1	Thale cress	plastid	80.68	80.97
GSMUA_Achr4P03580_001	Banana	plastid	73.88	80.82
CDY53969	Canola	plastid	79.25	80.25
PGSC0003DMT400018994	Potato	plastid	78.35	79.06
Solyc11g065830.1.1	Tomato	plastid	78.35	78.92
CDX97208	Canola	plastid	79.79	78.38
KRH24714	Soybean	plastid	75.13	75.95
KRH29718	Soybean	plastid	74.78	74.64
TraesCS5B01G105700.1	Wheat	plastid	74.06	74.33
TraesCS5A01G100600.1	Wheat	golgi, plastid	73.52	74.05
Os12t0515400-01	Rice	plastid	72.09	73.54
HORVU5Hr1G027720.1	Barley	plastid	73.7	72.03
GSMUA_Achr7P27130_001	Banana	plastid	68.69	70.59
Zm00001d023929_P001	Maize	plastid	72.45	70.07
EES16067	Sorghum	plastid	72.09	69.01
VIT_03s0017g00640.t01	Wine grape	plastid	38.82	38.48

Protein Annotations

EntrezGene:100253664	wikigene:100253664	MapMan:24.2.7.1.2	ProteinID:CCB43708	ProteinID:CCB43708.1	InterPro:CitT-rel
UniProt:F6GU44	EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100253664
wikigene:LOC100253664	PFAM:PF00939	PANTHER:PTHR42826	PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	TIGR:TC63409
TIGRFAMs:TIGR00785	TMHMM:TMhelix	UniParc:UPI00015C7549	ArrayExpress:VIT_06s0004g02120	EnsemblPlantsGene:VIT_06s0004g02120	EnsemblPlants:VIT_06s0004g02120.t01
unigene:Vvi.4323	RefSeq:XP_002282809	RefSeq:XP_002282809.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:2581696..2586302

Molecular Weight (calculated)

59435.2 Da

IEP (calculated)

10.204

GRAVY (calculated)

0.703

Length

559 amino acids

Sequence
(BLAST)

001: MASLPLSSSC HLGFRPFSRG QSPPSISFLR SRSTSNGGKQ FQQSLLTTTT NPLRVPSPIS QTNRVARKLT TVVRASSSTA VTSNPNPPWQ GAALKPLAAA
101: IATGVILWFV PQPAGVSRNA WQLLAIFLAT IVGIITQPLP LGAVALLGLG ASVLTKTLTF AAAFSAFGDP IPWLIALAFF FARGFIKTGL GNRIAYQFVS
201: LFGSSSLGLG YSLVFSEALL APAIPSVSAR AGGIFLPLVK SLCVACGSNV GDGTENRLGS WLMLTCFQTS CISSAMFLTG MAANPLSANL TFNTIKQTLG
301: WTEWAKAAFV PGLVSLIVVP LLLYVIYPPT VKSSPDAPKL AREKLENMGP MSRNEIIMAV TLLLTVGLWI FGGVLNVDAV TAAILGLSVL LVTGVVTWKE
401: CLAESVAWDT LTWFAALIAM AGYLNKYGLI SWFSQTVVKF VGGLGLSWQL SFSILLLLYF YSHYFFASGA AHIGAMFTAF LSVASALGTP PYFGAMVLAF
501: LSNLMGGLTH YGIGSAPIFY GANYVSLAKW WGYGFLISIV NIVIWLGVGG VWWKAIGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.