Factsheet for Solyc11g065830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018994	Potato	plastid	98.02	98.19
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.49	86.87
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.95	85.86
GSMUA_Achr4P03580_001	Banana	plastid	74.41	80.82
AT5G12860.1	Thale cress	plastid	80.0	79.71
CDY53969	Canola	plastid	78.74	79.17
VIT_06s0004g02120.t01	Wine grape	plastid	78.92	78.35
CDX97208	Canola	plastid	78.74	76.8
TraesCS5A01G100600.1	Wheat	golgi, plastid	75.86	75.86
TraesCS5B01G105700.1	Wheat	plastid	75.86	75.58
KRH24714	Soybean	plastid	75.14	75.41
KRH29718	Soybean	plastid	75.68	75.0
Os12t0515400-01	Rice	plastid	73.87	74.82
HORVU5Hr1G027720.1	Barley	plastid	75.32	73.08
Zm00001d023929_P001	Maize	plastid	74.05	71.11
EES16067	Sorghum	plastid	73.69	70.03
GSMUA_Achr7P27130_001	Banana	plastid	68.29	69.67
Solyc11g010290.1.1	Tomato	plastid	37.84	41.34
Solyc01g105540.2.1	Tomato	plastid	39.1	38.07

Protein Annotations

MapMan:24.2.7.1.2	InterPro:CitT-rel	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0006814	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009624	GO:GO:0009941	GO:GO:0009987	GO:GO:0015131	GO:GO:0015139
GO:GO:0015140	GO:GO:0015729	GO:GO:0015742	GO:GO:0016020	GO:GO:0016021	GO:GO:0019676
GO:GO:0055085	GO:GO:0071423	GO:GO:1902356	UniProt:K4D9J3	PFAM:PF00939	PANTHER:PTHR42826
PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	EnsemblPlantsGene:Solyc11g065830.1	EnsemblPlants:Solyc11g065830.1.1	TIGRFAMs:TIGR00785	TMHMM:TMhelix
UniParc:UPI0002769B0A	SEG:seg	:	:	:	:

Description

Dicarboxylate transporter 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G12860) UniProtKB/Swiss-Prot;Acc:Q9LXV3]

Coordinates

chr11:-:51396819..51400311

Molecular Weight (calculated)

58794.1 Da

IEP (calculated)

10.227

GRAVY (calculated)

0.746

Length

555 amino acids

Sequence
(BLAST)

001: MASLALTSAV NLRLRPTPSQ KPRISITQSL HFTQTSLKST NLGKSLNLGG KRLNLEKSRR VIVKASASAS ASSSPAIVPQ QQPPWQGAAM KPLIASIATG
101: VILWFIPAPA GVTKNAWQLL AIFLATIVGI ITQPLPLGAV ALMGLGACVL TKTLTFAAAF SAFGDPIPWL IALAFFFARG FIKTGLGNRI AYQFVKLFGS
201: SSLGLGYSLV FSEALLAPAI PSVSARAGGI FLPLVKSLCV ACGSNAGDGT EHKLGSWLML TCFQTSVISS SMFLTAMAAN PLSANLTLST INQTIGWMDW
301: AKAAIVPGLV SLIVVPLLLY IIYPPTVKSS PDAPRLAKER LEKMGPMSKN EIIMAVTLLL TVGLWVFGGA LKVDAVTAAI LGLSVLLVTG VVTWKECLGE
401: AVAWDTLTWF AALIAMAGYL NKYGLISWFS ETVVKVVGGL GLSWQLSFGI LVLLYFYSHY FFASGAAHIG AMFTAFLSVA SALGTPPYLG ALVLSFLSNL
501: MGGITHYGIG SAPVFYGANY VPLAKWWGYG FVCSVVNLLI WLGVGGIWWK AIGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.