CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24714	Soybean	plastid	84.82	85.9
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.54	85.86
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.82	84.51
GSMUA_Achr4P03580_001	Banana	plastid	72.32	79.26
CDY53969	Canola	plastid	76.07	77.17
AT5G12860.1	Thale cress	plastid	75.54	75.94
PGSC0003DMT400018994	Potato	plastid	75.0	75.81
Solyc11g065830.1.1	Tomato	plastid	75.0	75.68
CDX97208	Canola	plastid	76.43	75.22
VIT_06s0004g02120.t01	Wine grape	plastid	74.64	74.78
Os12t0515400-01	Rice	plastid	72.5	74.09
TraesCS5A01G100600.1	Wheat	golgi, plastid	72.86	73.51
TraesCS5B01G105700.1	Wheat	plastid	72.68	73.07
HORVU5Hr1G027720.1	Barley	plastid	71.96	70.45
Zm00001d023929_P001	Maize	plastid	72.68	70.42
EES16067	Sorghum	plastid	72.86	69.86
GSMUA_Achr7P27130_001	Banana	plastid	67.14	69.12
KRH10575	Soybean	plastid	39.82	39.68
KRH43882	Soybean	endoplasmic reticulum, plastid	39.29	39.5
KRH18862	Soybean	golgi, plasma membrane, vacuole	15.18	34.69

Protein Annotations

EntrezGene:100796365	MapMan:24.2.7.1.2	EMBL:ACUP02006817	InterPro:CitT-rel	EnsemblPlantsGene:GLYMA_11G133800	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	UniProt:I1LJW4	EnsemblPlants:KRH29718	ProteinID:KRH29718	ProteinID:KRH29718.1
PFAM:PF00939	PANTHER:PTHR42826	PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix
UniParc:UPI000233D28F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:10229755..10233632

Molecular Weight (calculated)

59302.5 Da

IEP (calculated)

10.273

GRAVY (calculated)

0.781

Length

560 amino acids

Sequence
(BLAST)

001: MASVALTTTA LPYLRLRRNT AATLKPNRHS SISLSSLKPT LNASISSFPN FSLKKPSLVF NQKPSSLTVR ASAASITPAP APSSAPVQPW QGASIKPLIA
101: SIATGVILWF SPVPAGVNRN AWQLLAIFLG TIVGIITQPL PLGAVAILGL GVSVLTKTLP FAAAFSGFGD PIPWLIALAF FFAKGFIKTG LGNRVAYQFV
201: KLFGSSSLGL GYSLVFSEAL LAPAIPSVSA RAGGIFLPLV KALCVACGSN AGDGTEHRLG AWLMLTCFQT SVITSAMFLT AMAANPLCAT LTLNSINQTI
301: GWLDWAKAAI VPGLASLVLV PLILYVIYPP TLKSSPDAPK LAKEKLEKMG PMTTNEKIMT ATLFLTVGLW VFGGLLNVDA VSAAILGLSV LLVTGVVTWK
401: ECLAEGVAWD TLTWFAALIA MAGYLNKYGL ISWFSQTVVK FVGGLGLSWQ LSFGILVLLY FYSHYFFASG AAHIGAMFTA FLSVATALGT PPFFGAIVLS
501: FLSNLMGGLT HYGIGSAPVF FGANYVPLAK WWGYGFLISI VNIIIWLGLG GVWWKFIGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.