CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	53.62	99.66
CDX97208	Canola	plastid	98.19	95.25
AT5G12860.1	Thale cress	plastid	91.67	90.84
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.38	82.49
GSMUA_Achr4P03580_001	Banana	plastid	74.09	80.04
VIT_06s0004g02120.t01	Wine grape	plastid	80.25	79.25
Solyc11g065830.1.1	Tomato	plastid	79.17	78.74
PGSC0003DMT400018994	Potato	plastid	78.44	78.16
KRH24714	Soybean	plastid	77.17	77.03
KRH29718	Soybean	plastid	77.17	76.07
Os12t0515400-01	Rice	plastid	74.64	75.18
TraesCS5A01G100600.1	Wheat	golgi, plastid	75.18	74.77
TraesCS5B01G105700.1	Wheat	plastid	75.18	74.51
HORVU5Hr1G027720.1	Barley	plastid	74.64	72.03
EES16067	Sorghum	plastid	75.0	70.89
GSMUA_Achr7P27130_001	Banana	plastid	69.75	70.77
Zm00001d023929_P001	Maize	plastid	73.91	70.59
CDY43805	Canola	plastid	40.94	40.72
CDX81219	Canola	plastid	40.4	40.11
CDY18717	Canola	plastid	40.58	39.79
CDX84512	Canola	plastid	40.4	39.68
CDY31328	Canola	plastid	38.77	38.42
CDY46791	Canola	plasma membrane	38.41	32.27

Protein Annotations

MapMan:24.2.7.1.2	GO:A0A078IX55	UniProt:A0A078IX55	EnsemblPlants:CDY53969	ProteinID:CDY53969	ProteinID:CDY53969.1
InterPro:CitT-rel	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00011833001	PFAM:PF00939
PANTHER:PTHR42826	PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix	UniParc:UPI0004EDDF14
SEG:seg	:	:	:	:	:

Description

BnaA10g30010DBnaA10g30010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IX55]

Coordinates

chrLK033258:-:31612..33972

Molecular Weight (calculated)

58633.7 Da

IEP (calculated)

10.179

GRAVY (calculated)

0.790

Length

552 amino acids

Sequence
(BLAST)

001: MASLALSGSC SLAFPLKSRS LLLPRPPSSL NLLKKPLRST ESRFSSVKSP LHIALTKRST LVKASSSAAA SSSPAPVAPA PWQGAAIKPL LASIATGVII
101: WFLPVPEGVT RSAWQLLAIF LATIVGIITQ PLPLGAVALL GLGASVLTKT LTFAAAFSAF GDPIPWLIAL AFFFARGFIK TGLGNRVAYQ FVRLFGSSSL
201: GLGYSLVFSE ALLAPAIPSV SARAGGIFLP LVKSLCVACG SNVGDGTEHR LGAWLMLTCF QTSVISSSMF LTAMAANPLS ANLAFNTIKQ TIGWTDWAKA
301: AIVPGMVSLI VVPFLLYLIY PPTVKSSPDA PKLAQEKLDK MGPMSKNELI MAATLFLTVG LWIFGAKLSV DAVTAAILGL SVLLVTGVVT WKECLAESVA
401: WDTLTWFAAL IAMAGYLNKY GLIEWFSQTV VKFVGGLGLS WQLSFGILVL LYFYTHYFFA SGAAHIGAMF TAFLSVSTAL GTPPYFAALV LAFLSNLMGG
501: LTHYGIGSAP IFYGANYVPL SKWWGYGFLI SIVNILIWLG VGGAWWKFIG LW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.