Factsheet for TraesCS5A01G100600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	53.33	99.66
TraesCS5B01G105700.1	Wheat	plastid	99.1	98.74
HORVU5Hr1G027720.1	Barley	plastid	97.48	94.58
Os12t0515400-01	Rice	plastid	81.98	83.03
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	43.96	82.15
EES16067	Sorghum	plastid	82.52	78.42
Zm00001d023929_P001	Maize	plastid	80.36	77.16
GSMUA_Achr4P03580_001	Banana	plastid	70.27	76.32
PGSC0003DMT400018994	Potato	plastid	76.04	76.17
Solyc11g065830.1.1	Tomato	plastid	75.86	75.86
CDY53969	Canola	plastid	74.77	75.18
AT5G12860.1	Thale cress	plastid	74.95	74.69
VIT_06s0004g02120.t01	Wine grape	plastid	74.05	73.52
CDX97208	Canola	plastid	75.32	73.46
KRH24714	Soybean	plastid	72.79	73.06
KRH29718	Soybean	plastid	73.51	72.86
GSMUA_Achr7P27130_001	Banana	plastid	66.31	67.65
TraesCS7A01G285000.1	Wheat	golgi	41.98	41.91
TraesCS5A01G248900.1	Wheat	golgi, unclear	41.08	41.76

Protein Annotations

MapMan:24.2.7.1.2	InterPro:CitT-rel	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	PFAM:PF00939	PANTHER:PTHR42826
PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G100600	EnsemblPlants:TraesCS5A01G100600.1
TIGR:cd00625	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:145677791..145681535

Molecular Weight (calculated)

58481.6 Da

IEP (calculated)

10.083

GRAVY (calculated)

0.763

Length

555 amino acids

Sequence
(BLAST)

001: MASSASAASP LTCHHLGIRH RPHLPSFSLR RRPTSPLSSK PISLSHSHSL PKPLTPSTAR HLLPPVAAAP ASPPAPVSPP AKPALQGAAI KPLLASIATG
101: VIIWFIPAPA GVARNAWQLL AVFLATIVGI ITQPLPLGAV ALLGLGAAVL TRTLTFAAAF SAFGDPIPWL IALAFFFARG FIKTGLGNRV AYQFVKAFGG
201: STLGLGYSLV FAEAFLAPAI PSVSARAGGI FLPLVKSLCE ACGSRTDDGT ERKLGAWLML TCFQTSVVSS AMFLTAMAAN PLAANLTLST IGQGIGWTLW
301: AKAAIVPGLL SLLIVPLVLY VIYPPEVKTS PDAPRLAKER LAKMGPMSTE EKIMAGTLLL TVGLWIFGGM LSVDAVSAAI LGLSVLLITG VVTWKECLAE
401: SVAWDTLTWF AALIAMAGYL NKYGLISWFS ETVVKFVGGL GLSWQLSFGV LVLMYFYSHY FFASGAAHIG AMFTAFLSVA SALGTPPLFA AMVMSFLSNL
501: MGGLTHYGIG SAPVFYGAGY VPLAEWWGYG FVISVVNIII WLGAGGFWWK MIGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.