Factsheet for PGSC0003DMT400018994

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065830.1.1	Tomato	plastid	98.19	98.02
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	46.03	85.86
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.03	85.86
GSMUA_Achr4P03580_001	Banana	plastid	74.37	80.63
AT5G12860.1	Thale cress	plastid	79.06	78.64
CDY53969	Canola	plastid	78.16	78.44
VIT_06s0004g02120.t01	Wine grape	plastid	79.06	78.35
CDX97208	Canola	plastid	78.7	76.63
TraesCS5A01G100600.1	Wheat	golgi, plastid	76.17	76.04
TraesCS5B01G105700.1	Wheat	plastid	76.17	75.76
KRH24714	Soybean	plastid	75.27	75.41
Os12t0515400-01	Rice	plastid	74.19	75.0
KRH29718	Soybean	plastid	75.81	75.0
HORVU5Hr1G027720.1	Barley	plastid	75.63	73.25
Zm00001d023929_P001	Maize	plastid	74.37	71.28
EES16067	Sorghum	plastid	74.01	70.21
GSMUA_Achr7P27130_001	Banana	plastid	68.41	69.67
PGSC0003DMT400041649	Potato	plastid	38.99	42.52
PGSC0003DMT400032652	Potato	plastid	41.88	39.73
PGSC0003DMT400017518	Potato	plastid	17.15	35.06

Protein Annotations

EntrezGene:102598440	MapMan:24.2.7.1.2	InterPro:CitT-rel	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0006814
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009941	GO:GO:0009987	GO:GO:0015131
GO:GO:0015139	GO:GO:0015140	GO:GO:0015729	GO:GO:0015742	GO:GO:0016020	GO:GO:0016021
GO:GO:0019676	GO:GO:0055085	GO:GO:0071423	GO:GO:1902356	UniProt:M1ABG7	PFAM:PF00939
EnsemblPlantsGene:PGSC0003DMG400007359	PGSC:PGSC0003DMG400007359	EnsemblPlants:PGSC0003DMT400018994	PANTHER:PTHR42826	PANTHER:PTHR42826:SF3	InterPro:SLC13A/DASS
TIGRFAMs:TIGR00785	TMHMM:TMhelix	UniParc:UPI000296A9A5	RefSeq:XP_006361749.1	SEG:seg	:

Description

2-oxoglutarate/malate translocator, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400007359]

Coordinates

chr11:-:38102563..38106893

Molecular Weight (calculated)

58762.9 Da

IEP (calculated)

10.180

GRAVY (calculated)

0.725

Length

554 amino acids

Sequence
(BLAST)

001: MASLALTSAV NLRLRPTPSQ KPRISITQSL HFTQTSLKTT NLGKSLNLGG KRLNHEKSRR VIVKTSASAS ASSPAIVPQQ QPPWQGAAMK PLIASIATGV
101: ILWFIPAPAG VTKNAWQLLA IFLATIVGII TQPLPLGAVA LMGLGACVLT KTLTFAAAFS AFGDPIPWLI ALAFFFARGF IKTGLGNRIA YQFVKLFGSS
201: SLGLGYSLVF SEALLAPAIP SVSARAGGIF LPLVKSLCVA CGSNAGDGTE HKLGSWLMLT CFQTSVISSS MFLTAMAANP LSANLTLSTI NQTIGWMDWA
301: KAAIVPGLVS LIVVPLLLYI IYPPTVKSSP DAPRLAKERL EQMGPMSKNE IIMAGTLLLT VGLWVFGGAL KVDAVTAAIL GLSVLLVTGV VTWKECLGEA
401: VAWDTLTWFA ALIAMAGYLN KYGLISWFSE TVVKVVGGLS LSWQLSFGIL VLLYFYSHYF FASGAAHIGA MFTAFLSVAS ALGTPPYLGA LVLSFLSNLM
501: GGITHYGIGS APVFYGANYV PLAKWWGYGF VCSVVNLIIW LGVGGIWWKA IGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.