Factsheet for Os12t0515400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

vacuole: 18557835
plastid: 21433289

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.18	92.59
Bra008876.1-P	Field mustard	extracellular, plasma membrane, vacuole	44.71	82.49
TraesCS5A01G100600.1	Wheat	golgi, plastid	83.03	81.98
TraesCS5B01G105700.1	Wheat	plastid	82.85	81.51
HORVU5Hr1G027720.1	Barley	plastid	82.66	79.2
Zm00001d023929_P001	Maize	plastid	82.3	78.03
EES16067	Sorghum	plastid	81.39	76.37
GSMUA_Achr4P03580_001	Banana	plastid	71.17	76.32
CDY53969	Canola	plastid	75.18	74.64
PGSC0003DMT400018994	Potato	plastid	75.0	74.19
AT5G12860.1	Thale cress	plastid	75.18	73.97
Solyc11g065830.1.1	Tomato	plastid	74.82	73.87
KRH24714	Soybean	plastid	73.36	72.69
KRH29718	Soybean	plastid	74.09	72.5
CDX97208	Canola	plastid	75.18	72.41
VIT_06s0004g02120.t01	Wine grape	plastid	73.54	72.09
GSMUA_Achr7P27130_001	Banana	plastid	66.97	67.46
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	8.58	46.53
Os08t0481800-01	Rice	plastid	18.25	41.84
Os09t0469950-00	Rice	plasma membrane	19.53	37.94

Protein Annotations

MapMan:24.2.7.1.2	EntrezGene:4352342	ProteinID:ABA98704.1	ProteinID:BAF29904.1	ProteinID:BAT17368.1	ProteinID:BAT17369.1
InterPro:CitT-rel	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:Os12g0515400	EnsemblPlants:Os12t0515400-01
PFAM:PF00939	PANTHER:PTHR42826	PANTHER:PTHR42826:SF3	UniProt:Q2QPW3	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785
TMHMM:TMhelix	UniParc:UPI0000680FC0	RefSeq:XP_015620646.1	SEG:seg	:	:

Description

Similar to Plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-01);Similar to plastidic 2-oxoglutarate/malate transporter. (Os12t0515400-02)

Coordinates

chr12:+:20005405..20008855

Molecular Weight (calculated)

57543.5 Da

IEP (calculated)

10.121

GRAVY (calculated)

0.768

Length

548 amino acids

Sequence
(BLAST)

001: MATSTSAATA PLTCHHLGLR LRPRLPSLPL RPLSPSPSLS LSRPTPLTPS PPPRHRALHA SASAAPAAPP SQPPKPVLQG AAIKPLVATI GTGVLIWLVP
101: PPAGVARNAW QLLSIFLATI VGIITQPLPL GAVALLGLGA AVLTRTLTFA AAFSAFGDPI PWLIALAFFF ARGFIKTGLG SRVAYAFVSA FGGSSLGLGY
201: ALVFAEALLA PAIPSVSARA GGIFLPLVKS LCEACGSRAG DGTERRLGSW LMLTCFQTSV ISSAMFLTAM AANPLAANLT AGTIGQGIGW TLWAKAAIVP
301: GLLSLVFVPL ILYLIYPPEV KTSPDAPRLA KERLEKMGPM SKEEKIMAGT LFLTVGLWIF GGMLNVDAVS AAILGLSVLL ISGVVTWKEC LGEAVAWDTL
401: TWFAALIAMA GYLNKYGLIS WFSETVVKFV GGLGLSWQLS FGVLVLLYFY SHYFFASGAA HIGAMFTAFL SVSSALGTPP LIAAMVLSFL SNIMGGLTHY
501: GIGSAPVFYG AGYVPLAQWW GYGFVISIVN IIIWLGAGGF WWKMLGLW

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.