Factsheet for PGSC0003DMT400017518

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0469950-00	Rice	plasma membrane	52.03	50.0
PGSC0003DMT400032652	Potato	plastid	97.42	45.21
Solyc01g105540.2.1	Tomato	plastid	90.04	42.81
AT5G64290.1	Thale cress	plastid	57.56	27.71
Bra037771.1-P	Field mustard	plastid	57.2	27.53
CDY18717	Canola	plastid	57.2	27.53
Zm00001d005950_P001	Maize	plastid	55.35	27.08
KRH10575	Soybean	plastid	56.09	27.05
Bra024282.1-P	Field mustard	plastid	54.98	26.85
TraesCS5A01G248900.1	Wheat	golgi, unclear	53.87	26.74
CDY43805	Canola	plastid	54.61	26.67
EER96900	Sorghum	plastid	54.61	26.57
KRH43882	Soybean	endoplasmic reticulum, plastid	54.61	26.57
CDX81219	Canola	plastid	54.24	26.44
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	53.14	26.18
CDX84512	Canola	plastid	54.24	26.16
VIT_03s0017g00640.t01	Wine grape	plastid	54.24	26.06
TraesCS5B01G246600.1	Wheat	plastid	52.4	25.82
TraesCS7D01G283000.1	Wheat	unclear	52.77	25.72
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	52.77	25.72
TraesCS7A01G285000.1	Wheat	golgi	52.77	25.72
AT5G64280.1	Thale cress	plastid	52.03	25.68
Zm00001d031253_P001	Maize	plastid	51.29	25.23
EES04490	Sorghum	plastid	52.4	25.22
PGSC0003DMT400041649	Potato	plastid	47.23	25.2
HORVU7Hr1G063220.1	Barley	plastid	51.29	25.0
GSMUA_Achr10P...	Banana	mitochondrion	50.92	24.82
EES15485	Sorghum	plastid	50.18	24.68
HORVU5Hr1G070230.1	Barley	plastid	52.03	24.65
EES14336	Sorghum	golgi, plastid, vacuole	47.6	24.43
CDY31328	Canola	plastid	50.18	24.42
Bra031926.1-P	Field mustard	plastid	49.45	24.1
CDY46791	Canola	plasma membrane	50.18	20.7
PGSC0003DMT400018994	Potato	plastid	35.06	17.15
Zm00001d020803_P001	Maize	peroxisome	3.69	6.02
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	7.38	5.93
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	7.38	5.93
KRH18862	Soybean	golgi, plasma membrane, vacuole	2.58	2.86
Os08t0481800-01	Rice	plastid	0.37	0.42
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400017518	EnsemblPlantsGene:PGSC0003DMG400006797	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:CitT-rel
InterPro:SLC13A/DASS	PANTHER:PTHR42826	PANTHER:PTHR42826:SF1	PFAM:PF00939	PGSC:PGSC0003DMG400006797	SEG:seg
TMHMM:TMhelix	UniParc:UPI000296F848	UniProt:M1A913	MapMan:24.2.7.1.2	:	:

Description

Glutamate/malate translocator [Source:PGSC_GENE;Acc:PGSC0003DMG400006797]

Coordinates

chr1:+:65678454..65681464

Molecular Weight (calculated)

29052.6 Da

IEP (calculated)

11.917

GRAVY (calculated)

0.381

Length

271 amino acids

Sequence
(BLAST)

001: MERLALHSPS SATSAAAAAT TSFSRLSYHH LRSRSSAIPT AALRPVSSLR SSISGSRFNL TGPRFNLFHP KPFLFNPLSK PTSRNPPSPK PITASSSPES
101: DKIVIVDVKP KPQGAKLIPL IISVSIGLIV RFLVPRPPEV SPQAWQLLSI FLSTIAGLVL SPLPVGAWAF LGLTTSVLTK TLTFSSAFSA FTNEVIWLIV
201: ISFFFARGFV KTGLGDRIAT YFVNWLGKST LGLSYGLALS EALIAPAMPS TTARAGGVFL PIIKSLTFSW K

Best Arabidopsis Sequence Match ( AT5G12860.1 )
(BLAST)

001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW

Arabidopsis Description

DIT1Dicarboxylate transporter 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.