Factsheet for Solyc01g105540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032652	Potato	plastid	97.54	95.21
PGSC0003DMT400017518	Potato	plastid	42.81	90.04
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	50.88	86.05
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	15.09	85.15
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	50.18	84.87
Os08t0481800-01	Rice	plastid	33.51	79.92
Bra037771.1-P	Field mustard	plastid	74.39	75.31
CDY18717	Canola	plastid	74.39	75.31
CDX81219	Canola	plastid	73.33	75.18
Bra024282.1-P	Field mustard	plastid	73.16	75.14
AT5G64290.1	Thale cress	plastid	74.04	74.96
CDY43805	Canola	plastid	72.98	74.95
CDX84512	Canola	plastid	72.98	74.02
KRH18862	Soybean	golgi, plasma membrane, vacuole	31.75	73.88
Zm00001d005950_P001	Maize	plastid	70.7	72.74
TraesCS5A01G248900.1	Wheat	golgi, unclear	69.65	72.71
TraesCS5B01G246600.1	Wheat	plastid	69.12	71.64
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	69.12	71.64
VIT_03s0017g00640.t01	Wine grape	plastid	70.88	71.63
EER96900	Sorghum	plastid	69.65	71.27
KRH10575	Soybean	plastid	69.82	70.82
KRH43882	Soybean	endoplasmic reticulum, plastid	69.12	70.74
TraesCS7D01G283000.1	Wheat	unclear	68.07	69.78
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	68.07	69.78
TraesCS7A01G285000.1	Wheat	golgi	68.07	69.78
HORVU7Hr1G063220.1	Barley	plastid	67.37	69.06
GSMUA_Achr10P...	Banana	mitochondrion	66.67	68.35
EES15485	Sorghum	plastid	65.96	68.24
Zm00001d031253_P001	Maize	plastid	65.61	67.88
HORVU5Hr1G070230.1	Barley	plastid	68.07	67.83
EES04490	Sorghum	plastid	66.49	67.32
EES14336	Sorghum	golgi, plastid, vacuole	61.93	66.86
AT5G64280.1	Thale cress	plastid	63.68	66.12
Solyc11g010290.1.1	Tomato	plastid	57.19	64.17
CDY31328	Canola	plastid	62.28	63.73
Bra031926.1-P	Field mustard	plastid	62.11	63.67
Os09t0469950-00	Rice	plasma membrane	27.54	55.67
CDY46791	Canola	plasma membrane	62.46	54.19
Zm00001d020803_P001	Maize	peroxisome	12.81	43.98
Solyc11g065830.1.1	Tomato	plastid	38.07	39.1

Protein Annotations

EnsemblPlants:Solyc01g105540.2.1	EnsemblPlantsGene:Solyc01g105540.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:CitT-rel
InterPro:SLC13A/DASS	PANTHER:PTHR42826	PANTHER:PTHR42826:SF1	PFAM:PF00939	SEG:seg	TIGRFAMs:TIGR00785
TMHMM:TMhelix	UniParc:UPI0002768F8F	UniProt:K4B2C4	MapMan:24.2.7.1.2	:	:

Description

No Description!

Coordinates

chr1:-:93680342..93684095

Molecular Weight (calculated)

60866.7 Da

IEP (calculated)

10.044

GRAVY (calculated)

0.562

Length

570 amino acids

Sequence
(BLAST)

001: MERLALHSPS SATSAAAAAT TSFSRLSYHH LRSRSFAIPT AALRQVSSLR SSNSGSRFNL TGPRFNLFHP KPFLFNPLSK PTSRNPPSPK PITASSSPES
101: DKVVIVDVKP KTQGAKLIPL IISVSIGLIV RFLVPRPPEV SPQAWQLLSI FLSTIAGLVL SPLPVGTLTF SSAFSAFTNE VIWLIVISFF FARGFVKTGL
201: GDRIATYFVK WLGKSTLGLS YGLALSEALI APAMPSTTAR AGGVFLPIIK SLSLSAGSKP GDPSSRKLGS YLIQSQFQCA GNSSALFLTA AAQNLLCLKL
301: AEELGVVIAN PWVSWFKAAS LPAFISLLAT PFILYKLYPP ETKDTPEAPA MAAKKLQLMG PVTKNEWVMI GTMLLAVSLW VFGDALGIAS VVAAMLGLSI
401: LLLLGVLDWD DCLSEKSAWD TLAWFAVLVG MASQLTNLGI VGWMSSCVAK SLQALSLSWP AAFGVLQASY FCIHYLFASQ TGHVGALYSA FLAMHLASGV
501: PGVLAALALA YNTNLFGALT HYSSGQAAVY FGAGYVDLPD VFKMGFVMAI VNAIIWGVVG TFWWKFLGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.