Factsheet for VIT_03s0017g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	49.65	83.09
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	49.65	83.09
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	14.72	82.18
Os08t0481800-01	Rice	plastid	33.69	79.5
Bra024282.1-P	Field mustard	plastid	72.69	73.87
CDY43805	Canola	plastid	72.52	73.69
KRH43882	Soybean	endoplasmic reticulum, plastid	72.16	73.07
CDX84512	Canola	plastid	72.69	72.95
CDX81219	Canola	plastid	71.63	72.66
KRH18862	Soybean	golgi, plasma membrane, vacuole	31.56	72.65
AT5G64290.1	Thale cress	plastid	72.16	72.29
KRH10575	Soybean	plastid	71.99	72.24
CDY18717	Canola	plastid	71.45	71.58
Bra037771.1-P	Field mustard	plastid	71.45	71.58
PGSC0003DMT400032652	Potato	plastid	73.94	71.4
TraesCS5A01G248900.1	Wheat	golgi, unclear	68.97	71.25
Solyc01g105540.2.1	Tomato	plastid	71.63	70.88
Zm00001d005950_P001	Maize	plastid	68.97	70.22
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	68.44	70.18
GSMUA_Achr10P...	Banana	mitochondrion	69.15	70.14
TraesCS5B01G246600.1	Wheat	plastid	68.26	70.0
HORVU7Hr1G063220.1	Barley	plastid	68.09	69.06
TraesCS7D01G283000.1	Wheat	unclear	67.91	68.88
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	67.91	68.88
TraesCS7A01G285000.1	Wheat	golgi	67.91	68.88
EER96900	Sorghum	plastid	67.91	68.76
EES15485	Sorghum	plastid	67.02	68.6
EES14336	Sorghum	golgi, plastid, vacuole	63.48	67.8
Zm00001d031253_P001	Maize	plastid	65.96	67.51
HORVU5Hr1G070230.1	Barley	plastid	68.09	67.13
EES04490	Sorghum	plastid	66.13	66.25
AT5G64280.1	Thale cress	plastid	63.65	65.39
CDY31328	Canola	plastid	64.54	65.35
Bra031926.1-P	Field mustard	plastid	63.3	64.21
Os09t0469950-00	Rice	plasma membrane	28.01	56.03
PGSC0003DMT400017518	Potato	plastid	26.06	54.24
CDY46791	Canola	plasma membrane	62.41	53.58
VIT_06s0004g02120.t01	Wine grape	plastid	38.48	38.82
Zm00001d020803_P001	Maize	peroxisome	11.35	38.55

Protein Annotations

EntrezGene:100257346	wikigene:100257346	MapMan:24.2.7.1.2	EMBL:AM437422	ProteinID:CAN78375	ProteinID:CAN78375.1
ProteinID:CCB57988	ProteinID:CCB57988.1	InterPro:CitT-rel	UniProt:F6HTH8	EMBL:FN596248	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100257346	wikigene:LOC100257346	PFAM:PF00939	PANTHER:PTHR42826
PANTHER:PTHR42826:SF1	InterPro:SLC13A/DASS	TIGR:TC69544	TIGRFAMs:TIGR00785	TMHMM:TMhelix	UniParc:UPI00021088B3
ArrayExpress:VIT_03s0017g00640	EnsemblPlantsGene:VIT_03s0017g00640	EnsemblPlants:VIT_03s0017g00640.t01	RefSeq:XP_002267754	RefSeq:XP_002267754.2	SEG:seg

Description

No Description!

Coordinates

chr3:+:15345486..15354837

Molecular Weight (calculated)

60587.5 Da

IEP (calculated)

9.886

GRAVY (calculated)

0.595

Length

564 amino acids

Sequence
(BLAST)

001: MESFVLYTSS SSFSPSSRLS LLRRSPPSLK SPPSIFPSSA SPRRLSNLRS PPSRLLPPLA LFKSKPSPKP RTFLHPIQAS PSPPPPPVEE SPKGAKLIPF
101: IISISIGLIV RFLVPKPVQV SMQAWQLLAI FLSTVAGLVL NPLPVGAWAF LGLTTSILTN TLSFSTAFGA FTNEVIWLIV ISFFFARGFV KTGLGDRVAN
201: YFVKWLGKST LGLSYGLTFS EILIAPAMPS TTARAGGIYL PIIKSLSLSV GSKPGDPSAR KLGAYLVQSQ FQSAGNSSAL FLTAAAQNML CLKLAEEVGV
301: IVSSPWVSWF RAASVPALVS LLLSPFILYN LYPPEIKDTP DAPAMAAKRL EHMGSVTRDE WVMIGTMILA VSLWVFGEAL GIASVVAAML GLSILLLLGV
401: LEWDDCLSEK SAWDTLAWFA VLVGMAGQLT NLGIVTWMSS CVANLLQSFS LSWPAAFGVL QASYFFIHYL FASQTGHVGA LYSAFLAMHV AAGVPGVLAA
501: LTLAYNTNLF GALTHYSSGQ AAVYYGAGYV DLPDVFKVGF MMALSNAVIW VVVGSFWWKF LGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.