Factsheet for Zm00001d005950_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	16.43	90.1
EER96900	Sorghum	plastid	90.25	89.77
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	51.26	84.27
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	50.72	83.38
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	81.59	82.18
TraesCS5A01G248900.1	Wheat	golgi, unclear	80.87	82.05
TraesCS5B01G246600.1	Wheat	plastid	81.05	81.64
HORVU5Hr1G070230.1	Barley	plastid	81.05	78.5
Zm00001d031253_P001	Maize	plastid	75.09	75.5
KRH18862	Soybean	golgi, plasma membrane, vacuole	31.59	71.43
GSMUA_Achr10P...	Banana	mitochondrion	71.48	71.22
PGSC0003DMT400032652	Potato	plastid	74.91	71.06
Solyc01g105540.2.1	Tomato	plastid	72.74	70.7
Bra024282.1-P	Field mustard	plastid	70.4	70.27
Os09t0469950-00	Rice	plasma membrane	35.74	70.21
CDY43805	Canola	plastid	70.22	70.09
CDX84512	Canola	plastid	70.94	69.93
CDX81219	Canola	plastid	69.86	69.6
AT5G64290.1	Thale cress	plastid	70.58	69.45
VIT_03s0017g00640.t01	Wine grape	plastid	70.22	68.97
KRH10575	Soybean	plastid	69.68	68.68
CDY18717	Canola	plastid	69.68	68.56
Bra037771.1-P	Field mustard	plastid	69.68	68.56
KRH43882	Soybean	endoplasmic reticulum, plastid	68.77	68.4
Bra031926.1-P	Field mustard	plastid	63.36	63.13
AT5G64280.1	Thale cress	plastid	62.45	63.02
CDY31328	Canola	plastid	63.0	62.66
PGSC0003DMT400017518	Potato	plastid	27.08	55.35
CDY46791	Canola	plasma membrane	62.45	52.66
Zm00001d020803_P001	Maize	peroxisome	14.62	48.8
Zm00001d033124_P001	Maize	mitochondrion, plastid	8.3	46.0
Zm00001d023929_P001	Maize	plastid	40.07	38.41

Protein Annotations

MapMan:24.2.7.1.2	EntrezGene:541643	EMBL:BT067735	UniProt:C0PHG6	InterPro:CitT-rel	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	ProteinID:ONM22401.1	PFAM:PF00939	PANTHER:PTHR42826	PANTHER:PTHR42826:SF1
InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix	UniParc:UPI000195CD20	EnsemblPlantsGene:Zm00001d005950	EnsemblPlants:Zm00001d005950_P001
EnsemblPlants:Zm00001d005950_T001	SEG:seg	:	:	:	:

Description

dicarboxylic acid transporter1 dicarboxylic acid transporter1

Coordinates

chr2:+:193717043..193722275

Molecular Weight (calculated)

59596.3 Da

IEP (calculated)

9.384

GRAVY (calculated)

0.565

Length

554 amino acids

Sequence
(BLAST)

001: MELHLATIAH RPPLPVPARG HHLRRRLHHL PAPLSFQNTY SPSLSSPHHH RLSPTLRRHL RLPLLASQAP NSNPEPEPEP EPTGAKLLPL VISIAIGLAV
101: RFLAPRPVEV SPQAWQLLSI FLSTIAGLVL GPLPVGAWAF LGLTAAVATR TLPFTAAFSA FTNEVIWLIV ISFFFARGFV KTGLGDRIAT YFVKWLGSST
201: LGLSYGLTLS EACIAPAMPS TTARAGGVFL PIIKSLSLSA ESKPNHPSSR KLGSYLVMTQ FQASGNSSAL FLTAAAQNLL CLKLAEELGV IIANPWVSWF
301: KAASLPALVS LLATPYLLYK IFPPETKDTP DAPALAEKKL KLMGPVTKNE SVMIGTMILA VSLWVFGDAI GVSSVVAAML GLSILLVLGV LDWDDCLNEK
401: SAWDTLAWFA VLVGMAGQLT NLGIVSWMSN CVAKLLQSFS LSWPVAFCVL EASYFLIHYL FASQTGHVGA LYSAFLAMHI AAGVPSVLSA LALAFNTNLF
501: GAITHYSSGQ AAVYFGAGYM ELPDVFRLGF ITALANTLIW GVVGTIWWKF LGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.