CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27798	Canola	endoplasmic reticulum, golgi, plastid, vacuole	95.58	92.94
CDY40697	Canola	endoplasmic reticulum, golgi, plastid, vacuole	93.38	90.24
CDX74152	Canola	plastid	92.43	89.06
AT3G05100.1	Thale cress	plastid	88.96	83.93
CDY53229	Canola	cytosol	12.93	82.0
VIT_14s0030g01370.t01	Wine grape	mitochondrion	61.51	80.91
CDX86183	Canola	cytosol	19.56	80.52
CDX80677	Canola	plastid	80.76	77.81
Solyc01g098040.2.1	Tomato	endoplasmic reticulum, plasma membrane	73.19	71.38
PGSC0003DMT400057857	Potato	endoplasmic reticulum, golgi	72.56	70.77
CDX86182	Canola	plastid	49.21	70.59
KRH65337	Soybean	golgi	72.87	66.57
KRH76204	Soybean	mitochondrion	72.56	66.28
HORVU2Hr1G020730.4	Barley	plastid	58.99	64.04
GSMUA_Achr5P11510_001	Banana	endoplasmic reticulum, golgi	64.04	60.96
Os07t0667400-01	Rice	endoplasmic reticulum, golgi	62.78	58.88
GSMUA_Achr1P02350_001	Banana	endoplasmic reticulum, golgi	64.04	58.17
TraesCS2B01G140200.1	Wheat	endoplasmic reticulum, golgi, vacuole	61.83	57.99
Zm00001d007108_P001	Maize	plasma membrane	63.41	57.93
KXG36887	Sorghum	endoplasmic reticulum, golgi	63.41	57.76
TraesCS2A01G119500.1	Wheat	endoplasmic reticulum, golgi, vacuole	61.83	57.65
TraesCS2D01G121300.1	Wheat	cytosol, endoplasmic reticulum, nucleus, plastid	61.83	48.4

Protein Annotations

EnsemblPlants:CDY41933	EnsemblPlantsGene:GSBRNA2T00073918001	Gene3D:3.40.50.150	InterPro:SAM-dependent_MTases	PANTHER:PTHR37886	PFscan:PS51257
ProteinID:CDY41933	ProteinID:CDY41933.1	SEG:seg	SUPFAM:SSF53335	TMHMM:TMhelix	UniParc:UPI0004EBF26A
UniProt:A0A078HYY1	MapMan:35.2	:	:	:	:

Description

BnaC05g46710DBnaC05g46710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYY1]

Coordinates

chrLK032510:+:230239..232335

Molecular Weight (calculated)

35911.2 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.232

Length

317 amino acids

Sequence
(BLAST)

001: MQKGIFVSVP VLVLSVSFAA AVIFLLSSSC SCPSSVSSPN DVGVSVSDVR LEERISPTRE DIEWVRDLIR SNGLRMQKNE LRKGINPRTR DQQLADLIQY
101: KGISHYEGEE EANNHTALPC PGELLVEQHH SNYGEPWAGG RDVFEFLAQS SNLKPNSRVL EIGCGTLRVG LHFIRYLNPT HFHCLEKDEL SLMAALRYEL
201: PSQGLLRKRP LILRGDDMEF SKFGLDTAYD LIYASAVFLH MPDKLVWTGL ERLVEKLKPY DGRIFVSHNV KFCSRLGGDE CAKKLASLGL EYLGKQTHDS
301: LLFNHYEIWF GFRRVKP

Best Arabidopsis Sequence Match ( AT3G05100.1 )
(BLAST)

001: MAFSSSSSSP AMQKGIFVSM PVLVLTVSFV AAVFFLLSSS FSSCSCPEAL SSSPTDAVEA SVGGSGGDVR FEDRISPTQD DIEWVRDLIR SNGLHMQKNE
101: LRKGINPRTR DQQLADLIQY KGISHYEGDE ANNHTALPCP GELLVEQHHS NYGEPWAGGR DVFEFLAESS SLKPNSRVLE IGCGTLRVGL HFIRYLSPQH
201: FHCLEKDELS LMAALRYELP SQGLLHKRPL IVRGDDMEFS KFGSDTAYDL IYASAVFLHM PDKLVWTGLE RLVDRLKPYD GRIFVSHNVK FCSRLGQDKC
301: SQKLASLGLE YLGKQTHDSL LFNHYEIWFG FRRFKT

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9MAA9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.