Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009981.1-P | Field mustard | plastid | 94.12 | 63.41 |
| CDX80677 | Canola | plastid | 92.76 | 62.31 |
| CDX74152 | Canola | plastid | 75.57 | 50.76 |
| CDY40697 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 73.76 | 49.7 |
| CDY41933 | Canola | endoplasmic reticulum, golgi, vacuole | 70.59 | 49.21 |
| CDY27798 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 72.4 | 49.08 |
| PGSC0003DMT400057857 | Potato | endoplasmic reticulum, golgi | 65.16 | 44.31 |
| Solyc01g098040.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 64.25 | 43.69 |
| VIT_14s0030g01370.t01 | Wine grape | mitochondrion | 46.61 | 42.74 |
| KRH76204 | Soybean | mitochondrion | 64.25 | 40.92 |
| KRH65337 | Soybean | golgi | 63.35 | 40.35 |
| HORVU2Hr1G020730.4 | Barley | plastid | 50.23 | 38.01 |
| Os07t0667400-01 | Rice | endoplasmic reticulum, golgi | 55.2 | 36.09 |
| GSMUA_Achr5P11510_001 | Banana | endoplasmic reticulum, golgi | 54.3 | 36.04 |
| TraesCS2A01G119500.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 54.75 | 35.59 |
| Zm00001d007108_P001 | Maize | plasma membrane | 55.66 | 35.45 |
| TraesCS2B01G140200.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 53.85 | 35.21 |
| KXG36887 | Sorghum | endoplasmic reticulum, golgi | 55.2 | 35.06 |
| GSMUA_Achr1P02350_001 | Banana | endoplasmic reticulum, golgi | 53.85 | 34.1 |
| TraesCS2D01G121300.1 | Wheat | cytosol, endoplasmic reticulum, nucleus, plastid | 54.75 | 29.88 |
| CDX86183 | Canola | cytosol | 2.26 | 6.49 |
| CDY53229 | Canola | cytosol | 0.9 | 4.0 |
Protein Annotations
| EnsemblPlants:CDX86182 | EnsemblPlantsGene:GSBRNA2T00144251001 | Gene3D:3.40.50.150 | GO:A0A078DAX0 | InterPro:SAM-dependent_MTases | PANTHER:PTHR37886 |
| ProteinID:CDX86182 | ProteinID:CDX86182.1 | SEG:seg | SUPFAM:SSF53335 | TMHMM:TMhelix | UniParc:UPI0004EE7CD2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA06g28990D
Coordinates
chrLK031845:+:215748..217024
Molecular Weight (calculated)
24318.1 Da
IEP (calculated)
6.298
GRAVY (calculated)
-0.043
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLSSSSSS AMQKGIVVTI PVLFLTASLS ALIFFIISSS LSSCSCPSSP SSQNYAIVGD ARSEERISTS REDIDWVKDL IRSNGLHMHE NVLRKGINPR
101: TREQQLQDLI QYKGISHYEG DEASNHTALP CPGELLVEEH HSNYGEPWAG GRDVFEFLAE ASRLKPNARV LEIGCGTLRV GLHFIRYLNP GSFHCLEKDE
201: LSLMAACTSF LLKVFCTNGL L
101: TREQQLQDLI QYKGISHYEG DEASNHTALP CPGELLVEEH HSNYGEPWAG GRDVFEFLAE ASRLKPNARV LEIGCGTLRV GLHFIRYLNP GSFHCLEKDE
201: LSLMAACTSF LLKVFCTNGL L
001: MASKETGMFS LAGELASLVE ESSSHVDDDS KPRSRMELKR SLELRLKKRV KEQCINGKFS DLLKKVIARP ETLRDAYDCI RLNSNVSITE RNGSVAFDSI
101: AEELSSGVFD VASNTFSIVA RDKTKEVLVL PSVALKVVQE AIRIVLEVVF SPHFSKISHS CRSGRGRASA LKYINNNISR SDWCFTLSLN KKLDVSVFEN
201: LLSVMEEKVE DSSLSILLRS MFEARVLNLE FGGFPKGHGL PQEGVLSRVL MNIYLDRFDH EFYRISMRHE ALGLDSKTDE DSPGSKLRSW FRRQAGEQGL
301: KSTTEQDVAL RVYCCRFMDE IYFSVSGPKK VASDIRSEAI GFLRNSLHLD ITDETDPSPC EATSGLRVLG TLVRKNVRES PTVKAVHKLK EKVRLFALQK
401: EEAWTLGTVR IGKKWLGHGL KKVKESEIKG LADSNSTLSQ ISCHRKAGME TDHWYKILLR IWMEDVLRTS ADRSEEFVLS KHVVEPTVPQ ELRDAFYKFQ
501: NAAAAYVSSE TANLEALLPC PQSHDRPVFF GDVVAPTNAI GRRLYRYGLI TAKGYARSNS MLILLDTAQI IDWYSGLVRR WVIWYEGCSN FDEIKALIDN
601: QIRMSCIRTL AAKYRIHENE IEKRLDLELS TIPSAEDIEQ EIQHEKLDSP AFDRDEHLTY GLSNSGLCLL SLARLVSESR PCNCFVIGCS MAAPAVYTLH
701: AMERQKFPGW KTGFSVCIPS SLNGRRIGLC KQHLKDLYIG QISLQAVDFG AWR
101: AEELSSGVFD VASNTFSIVA RDKTKEVLVL PSVALKVVQE AIRIVLEVVF SPHFSKISHS CRSGRGRASA LKYINNNISR SDWCFTLSLN KKLDVSVFEN
201: LLSVMEEKVE DSSLSILLRS MFEARVLNLE FGGFPKGHGL PQEGVLSRVL MNIYLDRFDH EFYRISMRHE ALGLDSKTDE DSPGSKLRSW FRRQAGEQGL
301: KSTTEQDVAL RVYCCRFMDE IYFSVSGPKK VASDIRSEAI GFLRNSLHLD ITDETDPSPC EATSGLRVLG TLVRKNVRES PTVKAVHKLK EKVRLFALQK
401: EEAWTLGTVR IGKKWLGHGL KKVKESEIKG LADSNSTLSQ ISCHRKAGME TDHWYKILLR IWMEDVLRTS ADRSEEFVLS KHVVEPTVPQ ELRDAFYKFQ
501: NAAAAYVSSE TANLEALLPC PQSHDRPVFF GDVVAPTNAI GRRLYRYGLI TAKGYARSNS MLILLDTAQI IDWYSGLVRR WVIWYEGCSN FDEIKALIDN
601: QIRMSCIRTL AAKYRIHENE IEKRLDLELS TIPSAEDIEQ EIQHEKLDSP AFDRDEHLTY GLSNSGLCLL SLARLVSESR PCNCFVIGCS MAAPAVYTLH
701: AMERQKFPGW KTGFSVCIPS SLNGRRIGLC KQHLKDLYIG QISLQAVDFG AWR
Arabidopsis Description
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.