CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38855	Canola	plastid	99.43	99.43
CDY05839	Canola	nucleus, peroxisome, plasma membrane	89.41	90.44
AT5G51150.1	Thale cress	nucleus, peroxisome, plasma membrane, plastid	90.36	90.02
CDX71692	Canola	nucleus, peroxisome, plasma membrane	88.66	89.67
VIT_16s0039g02700.t01	Wine grape	plasma membrane	74.86	74.86
KRG92233	Soybean	plasma membrane	71.83	73.08
PGSC0003DMT400021507	Potato	plasma membrane	70.7	71.65
Solyc03g093990.2.1	Tomato	plasma membrane	70.7	71.65
KRH34562	Soybean	plasma membrane	70.51	71.32
GSMUA_Achr8P14960_001	Banana	plasma membrane, plastid	60.11	67.23
Os07t0494900-01	Rice	endoplasmic reticulum	23.44	66.31
HORVU2Hr1G051560.3	Barley	cytosol, peroxisome	61.63	66.13
KRH71877	Soybean	cytosol	17.96	65.97
EER97254	Sorghum	plastid	68.43	65.23
Zm00001d000436_P001	Maize	plastid	67.86	65.04
TraesCS2D01G236700.1	Wheat	plastid	64.46	62.57
TraesCS2B01G254400.1	Wheat	plastid	64.46	62.34
TraesCS2A01G226700.1	Wheat	plastid	64.27	62.16
CDX73310	Canola	plastid	19.28	21.38
CDY28404	Canola	cytosol	17.58	20.22
CDY12034	Canola	cytosol, peroxisome, plastid	18.34	19.64
CDY03142	Canola	cytosol, peroxisome, plastid	17.96	19.35

Protein Annotations

EnsemblPlants:CDY32637	EnsemblPlantsGene:GSBRNA2T00052672001	GO:A0A078H5B1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM135_N	InterPro:Tmem135	ncoils:Coil	PANTHER:PTHR12459	PANTHER:PTHR12459:SF6	PFAM:PF02466
PFAM:PF15982	ProteinID:CDY32637	ProteinID:CDY32637.1	SEG:seg	UniParc:UPI0004EB4AB4	UniProt:A0A078H5B1
MapMan:35.2	:	:	:	:	:

Description

BnaC03g16050DBnaC03g16050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5B1]

Coordinates

chrLK032297:-:374756..377356

Molecular Weight (calculated)

58816.8 Da

IEP (calculated)

9.448

GRAVY (calculated)

-0.132

Length

529 amino acids

Sequence
(BLAST)

001: MPSTFSKPTS PSSPNNSPLS RASSEADLRL REAEERLRDA MAELQRRQRS AARGSHADLC DHADVSCVAN AIGNLCQSFL LSYGVRVGIG ILLRAFKLAR
101: GQSYSSLLDL KQLVSETDLI VREEACRIGL LFGGFTGSYH LLRCCLRKWR KKETPLNSVL AGSIAGLSIL ALDDSTQRRT LALYLLARLG QAAYNSAKSK
201: NKFHLWGSHW RHGDSLLFSL ACAQVMYAFI MRPETLPKSY REFIQKTGPV ARPVYQAVRE CCRGGPIDVA SLSAYISSKN EASDVEVEEF ASIIPCSAIH
301: PHTNSCLAQN ANAMSATFKK TFPLYFSLTF VPYVVLNLQR FMASPYRTSW HSIRDSVRST SFLSAFVGIF QAFICAHRKV ASKDHKIVYW FAGGVAALSV
401: MLEKKPRRSE LALYVLPRAG DSLWEILVNR HVLPDIKNAE VAMFCACMGG IMYYLEHEPD TLAPFLRGLI RRFLASQISN SSSKNRQSSS YVYRQSLDAL
501: EKPKPPPESG EGEAQKAEEK YNLEAIPGL

Best Arabidopsis Sequence Match ( AT5G51150.1 )
(BLAST)

001: MPSSFSKPDL DPSSSPPPIS PLSQDSSEAE RRLREAEERL RDAMAELQRR QRSAARGSHA ELCDHADVSC VANAIGNLCQ SFLLSYGVRV GIGILLRAFK
101: LARGQSYSSL LDLKQLVSEK DLIVREEACR IGLLFGGFTG SYHALRCCLR KWRKKETPLN SVLAGSVAGL SILALDDSNQ RRTLALYLLA RLGQAAYNSA
201: KSKNKFHLWG SHWRHGDSLL FSLACAQVMY SFIMRPETLP KSYREFIQKT GPVARPVYQA VRECCRGGPI DVASLSAYIS SKNEASDVKV EEFASIIPCA
301: AIHPNTNSCL AQNANAMSAT FKKTFPLYFS LTFVPYVVLH LQKFMASPYR TSWLAIRDSV RSTSFLSAFV GIFQAFICAH RKVATKDHKL VYWFAGGAAA
401: LSVMLEKKPR RSELALYVLP RAGDSLWEIL VNRHLLPDIK NAEVALFCGC MGGIMYYLEY EPDTMAPFLR GLIRRFLASQ ISNPSSKYPH SSSYSYLQTL
501: DALKKPKTQE SREGETPKAE EKYNLEAIPG L

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LU59]
SUBAcon: [peroxisome,plastid,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.