CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028061.1-P	Field mustard	cytosol	96.54	96.15
CDY12034	Canola	cytosol, peroxisome, plastid	91.04	90.49
CDX73310	Canola	plastid	82.08	84.49
CDY28404	Canola	cytosol	77.6	82.83
AT1G34630.1	Thale cress	nucleus	78.82	80.46
EER92718	Sorghum	cytosol, peroxisome, plastid	63.34	66.03
KRH12626	Soybean	cytosol	66.19	65.0
Os03t0190900-01	Rice	cytosol	62.32	63.62
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	60.29	62.32
TraesCS4A01G406900.1	Wheat	plasma membrane	61.1	62.24
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	61.1	62.11
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	60.69	61.57
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	62.73	60.75
KRH37587	Soybean	plastid	31.77	59.77
VIT_18s0001g05640.t01	Wine grape	cytosol	68.02	57.99
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	56.01	56.01
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	56.01	56.01
HORVU4Hr1G078610.3	Barley	mitochondrion	62.53	55.52
Zm00001d027280_P001	Maize	cytosol, plasma membrane, plastid	10.18	39.37
CDY05839	Canola	nucleus, peroxisome, plasma membrane	20.16	18.93
CDX71692	Canola	nucleus, peroxisome, plasma membrane	20.16	18.93
CDY38855	Canola	plastid	19.35	17.96
CDY32637	Canola	plastid	19.35	17.96

Protein Annotations

EnsemblPlants:CDY03142	EnsemblPlantsGene:GSBRNA2T00115567001	InterPro:TMEM135_N	InterPro:Tmem135	PANTHER:PTHR12459	PANTHER:PTHR12459:SF14
PFAM:PF15982	ProteinID:CDY03142	ProteinID:CDY03142.1	SEG:seg	UniParc:UPI0004EDE560	MapMan:35.2

Description

BnaC06g08310D

Coordinates

chrLK031940:-:910405..913022

Molecular Weight (calculated)

54058.1 Da

IEP (calculated)

9.940

GRAVY (calculated)

0.116

Length

491 amino acids

Sequence
(BLAST)

001: MSPSRRKANG SRCSCIGGEI DGISGGESFD LTCTHCNGSD SIKSDPASSW FLSSLSETKL DDSEKLRRII VASLKGFSIG TGIKGGLALF SIIVRFARRR
101: SSSKSRRTGD FSNSEAISMG IKETLRYGLF LGTFAGTFVS VDEAILFCLK PRTAKWRALF AGLVAGPSML LTGPNTTHTS LAVYILMRAA VLASRCGIKS
201: KRFGSICKPL TWEHGDLFLM CLSSSQILSA YILKQESLPS SYKSFLNKHS GKDLSILQGI KDLASAKPFT NLRAIEKHYK SVGVDIKLDP NMKIPCSMIH
301: GGESCTKHGF TFFLQAYMRA LPVYVPVYLI PALIVHRQDL LKKQYSILGK GLFGTARSSL FLSTYCTSAW VWTCLLFRTL DTCNIPLVAI ATFPTGLALA
401: IEKKSRRIEI SLYCLARAIE SFFTSMTEAG YIRPPKILRR ADVVVFSVST AIIMHCYAQE REVFRSKYLN VLDWVFGVPP PPPPPLSSEE T

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.