Factsheet for PGSC0003DMT400016388

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	98.57	98.57
KRH37587	Soybean	plastid	33.4	62.84
KRH12626	Soybean	cytosol	59.88	58.8
AT1G34630.1	Thale cress	nucleus	57.23	58.42
Bra034434.1-P	Field mustard	cytosol	52.14	57.14
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	54.99	56.84
EER92718	Sorghum	cytosol, peroxisome, plastid	54.38	56.69
TraesCS4A01G406900.1	Wheat	plasma membrane	55.19	56.22
CDY03142	Canola	cytosol, peroxisome, plastid	56.01	56.01
CDX73310	Canola	plastid	54.38	55.97
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	54.79	55.69
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	54.79	55.58
CDY28404	Canola	cytosol	51.93	55.43
Bra028061.1-P	Field mustard	cytosol	55.6	55.38
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	56.82	55.03
Os03t0190900-01	Rice	cytosol	53.77	54.89
CDY12034	Canola	cytosol, peroxisome, plastid	55.19	54.86
VIT_18s0001g05640.t01	Wine grape	cytosol	62.93	53.65
HORVU4Hr1G078610.3	Barley	mitochondrion	54.79	48.64
Zm00001d027280_P001	Maize	cytosol, plasma membrane, plastid	10.39	40.16
PGSC0003DMT400021507	Potato	plasma membrane	21.38	20.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400016388	EnsemblPlantsGene:PGSC0003DMG400006406	EntrezGene:102579190	InterPro:Tmem135	PANTHER:PTHR12459	PANTHER:PTHR12459:SF14
PGSC:PGSC0003DMG400006406	RefSeq:XP_015159640.1	SEG:seg	UniParc:UPI00029480EA	UniProt:M1A7L4	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006406]

Coordinates

chr4:+:63461257..63467544

Molecular Weight (calculated)

53997.4 Da

IEP (calculated)

9.901

GRAVY (calculated)

0.162

Length

491 amino acids

Sequence
(BLAST)

001: MPPSGDGADV SAGGPCTCSS LDEESLIQNC QHCRRSTLPS SSSSCSLLSL ESYPVQDYDK LWRIFSASVK GFTIGAGLKG GLAIFAVLSR LRRRKSMSSA
101: KKGQMVSSRD DVILALKETL RYGLFLGTFS GTFVSVDEIV SAWGGHRRTA KWRALLAGAI AGPSLLLTGS TQHTSLAVYI LVRAAVLASR CGIKSKRFGR
201: ICKPLTWAHG DIFLMCLSSS QILSAYILKQ DSLHPSYKSF LNKHGGKALV ILQGVKDLAC GNSVMNLEAI ENHYKSNGID IKLDPQMKVP CSIVHENQGC
301: GAHFISFLIQ AYKRALPVYL PVYLVPALIV HRQGILKRPN TILAKGLLGT ARSSLFLSMY CSSAWLWTCF LFRLFKRCNI PMVALGTFPT GLALAIEKKS
401: RRIEISLYCL ARALESFVTC MADVDYLPQS EKLKRGDVVI FSMATAIIMH CYAMERDVFK SKYLNVLDWV FGVPLPPYDT TPRKKCRSSS I

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.