CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28404	Canola	cytosol	90.57	93.91
CDY03142	Canola	cytosol, peroxisome, plastid	84.49	82.08
AT1G34630.1	Thale cress	nucleus	80.08	79.42
CDY12034	Canola	cytosol, peroxisome, plastid	81.13	78.34
EER92718	Sorghum	cytosol, peroxisome, plastid	63.52	64.33
KRH12626	Soybean	cytosol	67.3	64.2
Os03t0190900-01	Rice	cytosol	63.52	62.99
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	62.47	61.7
TraesCS4A01G406900.1	Wheat	plasma membrane	62.05	61.41
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	62.05	61.16
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	60.8	61.05
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	64.15	60.35
KRH37587	Soybean	plastid	32.91	60.15
VIT_18s0001g05640.t01	Wine grape	cytosol	69.39	57.47
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	55.97	54.38
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	55.97	54.38
HORVU4Hr1G078610.3	Barley	mitochondrion	62.26	53.71
Zm00001d027280_P001	Maize	cytosol, plasma membrane, plastid	9.01	33.86
CDY05839	Canola	nucleus, peroxisome, plasma membrane	22.22	20.27
CDX71692	Canola	nucleus, peroxisome, plasma membrane	22.22	20.27
CDY38855	Canola	plastid	21.38	19.28
CDY32637	Canola	plastid	21.38	19.28

Protein Annotations

EnsemblPlants:CDX73310	EnsemblPlantsGene:GSBRNA2T00106408001	GO:A0A078C914	InterPro:TMEM135_N	InterPro:Tmem135	PANTHER:PTHR12459
PANTHER:PTHR12459:SF14	PFAM:PF15982	ProteinID:CDX73310	ProteinID:CDX73310.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EF1E77	MapMan:35.2	:	:	:	:

Description

BnaC05g27960D

Coordinates

chrLK031798:+:1245494..1247808

Molecular Weight (calculated)

52538.3 Da

IEP (calculated)

10.093

GRAVY (calculated)

0.114

Length

477 amino acids

Sequence
(BLAST)

001: MSPSRQTSNG SRCSCVIDGI TGDDSGESFV LTCNHCNGSN SIKPDLSSSC SPSGSKSDDS EKLRRIIVAS IKAFSIGTGI KGGLAIFSIF ARLARRRSSS
101: QSRRTGDFSN SEAIAMGIKE TLRYGLFLGT FAGISHYLDP FFFLTAKWRA LFAGLVAGPS MLLTGPNTQH TSLAVYILMR AAVLASRCGI KSKRFGSICK
201: PLTWKHGDLF LMCLSSSQIL SSYILKQHSL PSSYKSFLNK QGGKDLSIIQ GVKDIASAKP FTNLRAIEKY YKSVGVDIKL DPNMKVPCSI IHGKESCTKH
301: ALTFFLQAYK RALPVYVPVY LIPALIVHRQ DLLKKQYSIL GKGLLGTARS SLFLSTYCTS SWAWTCLLFR IFETCSIPIV AIATFPTGLA LAIEKKSRRI
401: EISLYCLARA IESFFTCMTD AGYIRPPKIL KRADVVVFSV STAIIMHCYA QEREVFRSKY LNVLDWVCGV PPPREKT

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.