Factsheet for VIT_18s0001g05640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 2
mitochondrion 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G34630.1	Thale cress	nucleus	59.38	71.1
Bra034434.1-P	Field mustard	cytosol	55.21	70.98
KRH12626	Soybean	cytosol	60.94	70.2
CDX73310	Canola	plastid	57.47	69.39
CDY28404	Canola	cytosol	55.21	69.13
CDY03142	Canola	cytosol, peroxisome, plastid	57.99	68.02
CDY12034	Canola	cytosol, peroxisome, plastid	57.99	67.61
Bra028061.1-P	Field mustard	cytosol	57.64	67.34
EER92718	Sorghum	cytosol, peroxisome, plastid	54.69	66.88
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	55.03	66.74
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	57.99	65.88
Os03t0190900-01	Rice	cytosol	54.34	65.07
TraesCS4A01G406900.1	Wheat	plasma membrane	53.65	64.11
KRH37587	Soybean	plastid	28.82	63.6
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	53.3	63.56
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	53.99	63.34
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	52.95	63.02
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	53.65	62.93
HORVU4Hr1G078610.3	Barley	mitochondrion	52.78	54.97
Zm00001d027280_P001	Maize	cytosol, plasma membrane, plastid	9.72	44.09
VIT_16s0039g02700.t01	Wine grape	plasma membrane	19.27	20.98

Protein Annotations

EntrezGene:100260863	wikigene:100260863	MapMan:35.2	ProteinID:CCB45570	ProteinID:CCB45570.1	UniProt:F6H0Q1
EMBL:FN595227	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100260863	wikigene:LOC100260863	PFAM:PF15982	PANTHER:PTHR12459
PANTHER:PTHR12459:SF14	InterPro:TMEM135_N	TMHMM:TMhelix	InterPro:Tmem135	UniParc:UPI00021083A5	ArrayExpress:VIT_18s0001g05640
EnsemblPlantsGene:VIT_18s0001g05640	EnsemblPlants:VIT_18s0001g05640.t01	RefSeq:XP_002284150	RefSeq:XP_002284150.2	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:4407516..4416666

Molecular Weight (calculated)

63728.0 Da

IEP (calculated)

9.800

GRAVY (calculated)

0.081

Length

576 amino acids

Sequence
(BLAST)

001: MSPSGDGAGG RCACFSWENG GSDPDDPHCP HCGGSDPSSC SSILSNSIRI QDSEKLWRIV TASAKGFTIG VGIKGGLAIF SVVARLIARL RRRRLSAYAR
101: KFSNSEDVVI ALKETLRYGL FLGTFAGTFV SVDEIVAALG GHRRTARWRS LLAGAIAGPS MLLSGPNTQH TTLAIYILMR AAVLASRCGI KSKRFGRICK
201: PLTWSHGDIF LMCLSSSQIL SAYILKQESL PPSYKSFLNK HGGKDPIILQ AVKDIASGIP FTNLEAVENY YNTIGVKIKL DPSMKVPCSI IHGHQSCSKH
301: VVSFLIQAYK RALPVYLPVY LIPALIVHRQ DLLKRPYTIL GKGLLGTARS SLFLSVYCSS AWMWTCLLFR ILKRCNIPMV AMGTFPTGLA LAIEKKSRRI
401: EISLYCLSRA IESFFTCMVD AGYLQPSKNL KRADVVIFSL STAIIMHCYA QEREVFRSKY LNVLDWVFGV PPPPDETPRY KNRNEGLLLK FLLVLLFSSK
501: FVVGLYQLPS KAGHGEVKQG NFSIEDTFKV EVQEGVLEPH QDLPKSSITY SASFQVSAWS KERNMPMNYE DLLPNL

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.