Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034434.1-P | Field mustard | cytosol | 76.3 | 81.92 |
| CDX73310 | Canola | plastid | 79.42 | 80.08 |
| CDY28404 | Canola | cytosol | 76.3 | 79.78 |
| CDY12034 | Canola | cytosol, peroxisome, plastid | 81.08 | 78.95 |
| CDY03142 | Canola | cytosol, peroxisome, plastid | 80.46 | 78.82 |
| Bra028061.1-P | Field mustard | cytosol | 80.67 | 78.7 |
| EER92718 | Sorghum | cytosol, peroxisome, plastid | 65.49 | 66.88 |
| KRH12626 | Soybean | cytosol | 69.02 | 66.4 |
| Os03t0190900-01 | Rice | cytosol | 65.07 | 65.07 |
| TraesCS4A01G406900.1 | Wheat | plasma membrane | 64.03 | 63.9 |
| TraesCS4B01G306200.1 | Wheat | cytosol, peroxisome, plasma membrane | 64.03 | 63.77 |
| TraesCS4D01G304400.1 | Wheat | cytosol, peroxisome, plasma membrane | 63.62 | 63.22 |
| GSMUA_Achr3P01670_001 | Banana | cytosol, peroxisome, plastid | 62.37 | 63.16 |
| KRH37587 | Soybean | plastid | 33.89 | 62.45 |
| GSMUA_Achr6P10380_001 | Banana | cytosol, mitochondrion, plastid | 65.28 | 61.93 |
| VIT_18s0001g05640.t01 | Wine grape | cytosol | 71.1 | 59.38 |
| PGSC0003DMT400016388 | Potato | cytosol, nucleus, peroxisome | 58.42 | 57.23 |
| Solyc04g074140.2.1 | Tomato | cytosol, nucleus, peroxisome | 58.42 | 57.23 |
| HORVU4Hr1G078610.3 | Barley | mitochondrion | 63.83 | 55.52 |
| Zm00001d027280_P001 | Maize | cytosol, plasma membrane, plastid | 10.6 | 40.16 |
| AT5G51150.1 | Thale cress | nucleus, peroxisome, plasma membrane, plastid | 21.41 | 19.4 |
Protein Annotations
| MapMan:35.2 | EntrezGene:840367 | ProteinID:AEE31729.1 | ProteinID:ANM58346.1 | ProteinID:ANM58347.1 | ProteinID:ANM58348.1 |
| ArrayExpress:AT1G34630 | EnsemblPlantsGene:AT1G34630 | RefSeq:AT1G34630 | TAIR:AT1G34630 | RefSeq:AT1G34630-TAIR-G | EnsemblPlants:AT1G34630.1 |
| TAIR:AT1G34630.1 | EMBL:AY064983 | EMBL:AY141989 | Unigene:At.71088 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_001320790.1 | RefSeq:NP_001320791.1 | RefSeq:NP_001320792.1 | RefSeq:NP_174722.2 | PFAM:PF15982 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12459 |
| PANTHER:PTHR12459:SF14 | UniProt:Q8VZG0 | InterPro:TMEM135_N | TMHMM:TMhelix | InterPro:Tmem135 | UniParc:UPI000009C94E |
| SEG:seg | : | : | : | : | : |
Description
At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
Coordinates
chr1:+:12685176..12687641
Molecular Weight (calculated)
52787.3 Da
IEP (calculated)
10.001
GRAVY (calculated)
0.034
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.