Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, peroxisome, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- plastid 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05839 | Canola | nucleus, peroxisome, plasma membrane | 90.77 | 92.16 |
| CDX71692 | Canola | nucleus, peroxisome, plasma membrane | 89.64 | 91.01 |
| CDY32637 | Canola | plastid | 90.02 | 90.36 |
| CDY38855 | Canola | plastid | 89.83 | 90.17 |
| Bra029183.1-P | Field mustard | plastid | 89.64 | 89.98 |
| Bra035727.1-P | Field mustard | plastid | 90.4 | 78.18 |
| VIT_16s0039g02700.t01 | Wine grape | plasma membrane | 76.65 | 76.94 |
| KRG92233 | Soybean | plasma membrane | 74.39 | 75.96 |
| PGSC0003DMT400021507 | Potato | plasma membrane | 73.63 | 74.9 |
| Solyc03g093990.2.1 | Tomato | plasma membrane | 73.63 | 74.9 |
| KRH34562 | Soybean | plasma membrane | 72.88 | 74.0 |
| Os07t0494900-01 | Rice | endoplasmic reticulum | 25.24 | 71.66 |
| KRH71877 | Soybean | cytosol | 18.83 | 69.44 |
| GSMUA_Achr8P14960_001 | Banana | plasma membrane, plastid | 61.58 | 69.13 |
| HORVU2Hr1G051560.3 | Barley | cytosol, peroxisome | 63.28 | 68.15 |
| EER97254 | Sorghum | plastid | 70.81 | 67.75 |
| Zm00001d000436_P001 | Maize | plastid | 70.06 | 67.39 |
| TraesCS2D01G236700.1 | Wheat | plastid | 66.86 | 65.14 |
| TraesCS2B01G254400.1 | Wheat | plastid | 66.86 | 64.9 |
| TraesCS2A01G226700.1 | Wheat | plastid | 66.67 | 64.72 |
| AT1G34630.1 | Thale cress | nucleus | 19.4 | 21.41 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835189 | ProteinID:AED96044.1 | ArrayExpress:AT5G51150 | EnsemblPlantsGene:AT5G51150 | RefSeq:AT5G51150 |
| TAIR:AT5G51150 | RefSeq:AT5G51150-TAIR-G | EnsemblPlants:AT5G51150.1 | TAIR:AT5G51150.1 | EMBL:AY045838 | EMBL:AY091374 |
| Unigene:At.9687 | ProteinID:BAA97377.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_199928.1 | PFAM:PF02466 |
| PFAM:PF15982 | PO:PO:0000293 | PANTHER:PTHR12459 | PANTHER:PTHR12459:SF6 | UniProt:Q9LU59 | InterPro:TMEM135_N |
| InterPro:Tmem135 | UniParc:UPI00000A251A | SEG:seg | : | : | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LU59]
Coordinates
chr5:+:20788913..20791940
Molecular Weight (calculated)
59141.4 Da
IEP (calculated)
9.482
GRAVY (calculated)
-0.142
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSFSKPDL DPSSSPPPIS PLSQDSSEAE RRLREAEERL RDAMAELQRR QRSAARGSHA ELCDHADVSC VANAIGNLCQ SFLLSYGVRV GIGILLRAFK
101: LARGQSYSSL LDLKQLVSEK DLIVREEACR IGLLFGGFTG SYHALRCCLR KWRKKETPLN SVLAGSVAGL SILALDDSNQ RRTLALYLLA RLGQAAYNSA
201: KSKNKFHLWG SHWRHGDSLL FSLACAQVMY SFIMRPETLP KSYREFIQKT GPVARPVYQA VRECCRGGPI DVASLSAYIS SKNEASDVKV EEFASIIPCA
301: AIHPNTNSCL AQNANAMSAT FKKTFPLYFS LTFVPYVVLH LQKFMASPYR TSWLAIRDSV RSTSFLSAFV GIFQAFICAH RKVATKDHKL VYWFAGGAAA
401: LSVMLEKKPR RSELALYVLP RAGDSLWEIL VNRHLLPDIK NAEVALFCGC MGGIMYYLEY EPDTMAPFLR GLIRRFLASQ ISNPSSKYPH SSSYSYLQTL
501: DALKKPKTQE SREGETPKAE EKYNLEAIPG L
101: LARGQSYSSL LDLKQLVSEK DLIVREEACR IGLLFGGFTG SYHALRCCLR KWRKKETPLN SVLAGSVAGL SILALDDSNQ RRTLALYLLA RLGQAAYNSA
201: KSKNKFHLWG SHWRHGDSLL FSLACAQVMY SFIMRPETLP KSYREFIQKT GPVARPVYQA VRECCRGGPI DVASLSAYIS SKNEASDVKV EEFASIIPCA
301: AIHPNTNSCL AQNANAMSAT FKKTFPLYFS LTFVPYVVLH LQKFMASPYR TSWLAIRDSV RSTSFLSAFV GIFQAFICAH RKVATKDHKL VYWFAGGAAA
401: LSVMLEKKPR RSELALYVLP RAGDSLWEIL VNRHLLPDIK NAEVALFCGC MGGIMYYLEY EPDTMAPFLR GLIRRFLASQ ISNPSSKYPH SSSYSYLQTL
501: DALKKPKTQE SREGETPKAE EKYNLEAIPG L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.