Factsheet for VIT_16s0039g02700.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021507	Potato	plasma membrane	80.34	81.42
Solyc03g093990.2.1	Tomato	plasma membrane	80.15	81.23
KRG92233	Soybean	plasma membrane	79.77	81.15
KRH34562	Soybean	plasma membrane	79.21	80.11
CDY05839	Canola	nucleus, peroxisome, plasma membrane	76.18	77.06
CDX71692	Canola	nucleus, peroxisome, plasma membrane	75.8	76.67
AT5G51150.1	Thale cress	nucleus, peroxisome, plasma membrane, plastid	76.94	76.65
Os07t0494900-01	Rice	endoplasmic reticulum	26.65	75.4
CDY32637	Canola	plastid	74.86	74.86
CDY38855	Canola	plastid	74.48	74.48
Bra029183.1-P	Field mustard	plastid	74.29	74.29
HORVU2Hr1G051560.3	Barley	cytosol, peroxisome	68.43	73.43
GSMUA_Achr8P14960_001	Banana	plasma membrane, plastid	65.6	73.36
EER97254	Sorghum	plastid	75.24	71.71
Zm00001d000436_P001	Maize	plastid	74.48	71.38
TraesCS2D01G236700.1	Wheat	plastid	71.64	69.54
TraesCS2B01G254400.1	Wheat	plastid	71.46	69.1
TraesCS2A01G226700.1	Wheat	plastid	71.27	68.92
KRH71877	Soybean	cytosol	18.15	66.67
Bra035727.1-P	Field mustard	plastid	75.8	65.31
VIT_18s0001g05640.t01	Wine grape	cytosol	20.98	19.27

Protein Annotations

EntrezGene:100240785	wikigene:100240785	MapMan:35.2	ProteinID:CBI26581	ProteinID:CBI26581.3	ncoils:Coil
UniProt:D7T7W0	EMBL:FN595750	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100240785	wikigene:LOC100240785	PFAM:PF02466
PFAM:PF15982	PANTHER:PTHR12459	PANTHER:PTHR12459:SF6	InterPro:TMEM135_N	InterPro:Tmem135	UniParc:UPI00015C82E1
ArrayExpress:VIT_16s0039g02700	EnsemblPlantsGene:VIT_16s0039g02700	EnsemblPlants:VIT_16s0039g02700.t01	unigene:Vvi.17229	RefSeq:XP_002278821	RefSeq:XP_002278821.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:3071178..3077494

Molecular Weight (calculated)

58774.2 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.111

Length

529 amino acids

Sequence
(BLAST)

001: MQTTTAASTS PPPNGGENSD GAAEHRLREA EERLREAIEE LQRRQRHARG FHHPQCDHAN ESCVANAIGN LCQSFLLSYG VRVGIGILLR AFKLVRRQSY
101: SSLLDLKQLV SEKDLIVREE ACRVGLLFGG FTGSYHALRC LLRKLRKKET PLNAILAGSV AGLSILALDD SSRRRTLALY LAARLAQCAY NSAKSKNKFH
201: LWGSHWRHGD SLLFALACAQ VMYAFIMRPE TLPKSYQDFI QKTGPVAQPV YKAVMDTCRG SPVDIVSLSA YLSNRRESDN VKLEEFPSII PCSIIHPDTN
301: SCLAHNANAA SATFRKTFPL YFSLTFVPFV VLHLQKFMDT PARTCWHAIK GAVRSTTFLS AFVGIFQAVI CLHRKVASKD HKLVYWVAGG TSALSVLLEK
401: KARRSELALY VLPRAGDSLW YILVNRHLLP NIKNAEVPLF CACMGGIMYY LEHEPDTMAP FLRGLIRRFL ASRISNPGPP SSRTASYTYL QTLDALKKPK
501: LQEAQEPPAQ APAPASASEK YNLESIPGL

Best Arabidopsis Sequence Match ( AT5G51150.1 )
(BLAST)

001: MPSSFSKPDL DPSSSPPPIS PLSQDSSEAE RRLREAEERL RDAMAELQRR QRSAARGSHA ELCDHADVSC VANAIGNLCQ SFLLSYGVRV GIGILLRAFK
101: LARGQSYSSL LDLKQLVSEK DLIVREEACR IGLLFGGFTG SYHALRCCLR KWRKKETPLN SVLAGSVAGL SILALDDSNQ RRTLALYLLA RLGQAAYNSA
201: KSKNKFHLWG SHWRHGDSLL FSLACAQVMY SFIMRPETLP KSYREFIQKT GPVARPVYQA VRECCRGGPI DVASLSAYIS SKNEASDVKV EEFASIIPCA
301: AIHPNTNSCL AQNANAMSAT FKKTFPLYFS LTFVPYVVLH LQKFMASPYR TSWLAIRDSV RSTSFLSAFV GIFQAFICAH RKVATKDHKL VYWFAGGAAA
401: LSVMLEKKPR RSELALYVLP RAGDSLWEIL VNRHLLPDIK NAEVALFCGC MGGIMYYLEY EPDTMAPFLR GLIRRFLASQ ISNPSSKYPH SSSYSYLQTL
501: DALKKPKTQE SREGETPKAE EKYNLEAIPG L

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LU59]
SUBAcon: [peroxisome,plastid,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.