Factsheet for Solyc03g093990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
vacuole 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021507	Potato	plasma membrane	97.89	97.89
VIT_16s0039g02700.t01	Wine grape	plasma membrane	81.23	80.15
KRG92233	Soybean	plasma membrane	76.82	77.12
KRH34562	Soybean	plasma membrane	76.44	76.29
AT5G51150.1	Thale cress	nucleus, peroxisome, plasma membrane, plastid	74.9	73.63
CDY05839	Canola	nucleus, peroxisome, plasma membrane	73.75	73.61
CDX71692	Canola	nucleus, peroxisome, plasma membrane	73.56	73.42
Os07t0494900-01	Rice	endoplasmic reticulum	25.48	71.12
HORVU2Hr1G051560.3	Barley	cytosol, peroxisome	67.05	70.99
CDY32637	Canola	plastid	71.65	70.7
GSMUA_Achr8P14960_001	Banana	plasma membrane, plastid	63.79	70.4
Bra029183.1-P	Field mustard	plastid	71.26	70.32
CDY38855	Canola	plastid	71.26	70.32
KRH71877	Soybean	cytosol	18.97	68.75
Zm00001d000436_P001	Maize	plastid	71.07	67.21
EER97254	Sorghum	plastid	71.46	67.21
TraesCS2D01G236700.1	Wheat	plastid	70.11	67.16
TraesCS2B01G254400.1	Wheat	plastid	70.31	67.09
TraesCS2A01G226700.1	Wheat	plastid	70.11	66.91
Bra035727.1-P	Field mustard	plastid	73.37	62.38
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	19.92	21.18

Protein Annotations

EnsemblPlants:Solyc03g093990.2.1	EnsemblPlantsGene:Solyc03g093990.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM135_N	InterPro:Tmem135	ncoils:Coil
PANTHER:PTHR12459	PANTHER:PTHR12459:SF6	PFAM:PF02466	PFAM:PF15982	SEG:seg	UniParc:UPI000276766B
UniProt:K4BIS4	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:55702250..55708607

Molecular Weight (calculated)

58203.7 Da

IEP (calculated)

9.588

GRAVY (calculated)

-0.052

Length

522 amino acids

Sequence
(BLAST)

001: MRPLSSSSPP VLPNDASESG ESAERRLHEA EERLREAIEE LQRRQRRARG IYPPCDHADE SCVANAIGNV CQSFLLSYGV RVGIGILLRA FKLARRQSYS
101: SLLDLKQLVS EKDLIVREEA CRIGLLFGGF SGSYHALRCL LRKLRRKETP LNAILAGSVA GLSILALDDS NRRRTLALYL LARLSQCAYN SAKSKNQFHL
201: WGSHWSHGDS LLFAFACAQV MYSFIMRPES LPKAYRDFIQ KTGPVAAPVY KAVKDCCRGS PVDVASLHAY LSKAKGSTTI KLEEFPSIIP CSVIHPGTKS
301: CLVHDANAAA ATFRKTFPLY FSLTFVPFVV LRLQKFMDAP TRTCWYALTG AVRSTTFLSA FVGIFQAVIC CHRKVASKDH KLVYWLAGAL SGLSVLLEKK
401: ARRGELALYV LPRAADSLWY ILVNRHLLPD IKNAEVPLFC ACMGGIMYYL EHEPDTMAPF LRGLIRRFLA SRISNPTPPS NKGASYTYLH THDATKETKM
501: PEIRETETLT AEKYNLESIS GL

Best Arabidopsis Sequence Match ( AT5G51150.1 )
(BLAST)

001: MPSSFSKPDL DPSSSPPPIS PLSQDSSEAE RRLREAEERL RDAMAELQRR QRSAARGSHA ELCDHADVSC VANAIGNLCQ SFLLSYGVRV GIGILLRAFK
101: LARGQSYSSL LDLKQLVSEK DLIVREEACR IGLLFGGFTG SYHALRCCLR KWRKKETPLN SVLAGSVAGL SILALDDSNQ RRTLALYLLA RLGQAAYNSA
201: KSKNKFHLWG SHWRHGDSLL FSLACAQVMY SFIMRPETLP KSYREFIQKT GPVARPVYQA VRECCRGGPI DVASLSAYIS SKNEASDVKV EEFASIIPCA
301: AIHPNTNSCL AQNANAMSAT FKKTFPLYFS LTFVPYVVLH LQKFMASPYR TSWLAIRDSV RSTSFLSAFV GIFQAFICAH RKVATKDHKL VYWFAGGAAA
401: LSVMLEKKPR RSELALYVLP RAGDSLWEIL VNRHLLPDIK NAEVALFCGC MGGIMYYLEY EPDTMAPFLR GLIRRFLASQ ISNPSSKYPH SSSYSYLQTL
501: DALKKPKTQE SREGETPKAE EKYNLEAIPG L

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LU59]
SUBAcon: [peroxisome,plastid,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.