Factsheet for TraesCS4D01G304400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	96.69	96.89
TraesCS4A01G406900.1	Wheat	plasma membrane	95.25	95.64
Zm00001d028006_P001	Maize	plasma membrane	78.72	81.76
EER92718	Sorghum	cytosol, peroxisome, plastid	78.51	80.68
Os03t0190900-01	Rice	cytosol	79.34	79.83
HORVU4Hr1G078610.3	Barley	mitochondrion	89.26	78.12
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	68.8	70.11
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	69.42	66.27
Bra034434.1-P	Field mustard	cytosol	59.3	64.06
AT1G34630.1	Thale cress	nucleus	63.22	63.62
CDY28404	Canola	cytosol	59.3	62.39
CDX73310	Canola	plastid	61.16	62.05
KRH12626	Soybean	cytosol	63.02	61.0
CDY12034	Canola	cytosol, peroxisome, plastid	61.98	60.73
CDY03142	Canola	cytosol, peroxisome, plastid	61.57	60.69
Bra028061.1-P	Field mustard	cytosol	61.78	60.65
KRH37587	Soybean	plastid	30.58	56.7
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	55.58	54.79
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	55.37	54.58
VIT_18s0001g05640.t01	Wine grape	cytosol	63.02	52.95
TraesCS2D01G236700.1	Wheat	plastid	21.49	19.08

Protein Annotations

EnsemblPlants:TraesCS4D01G304400.1	EnsemblPlantsGene:TraesCS4D01G304400	InterPro:TMEM135_N	InterPro:Tmem135	PANTHER:PTHR12459	PANTHER:PTHR12459:SF14
PFAM:PF15982	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4D:-:472926322..472931029

Molecular Weight (calculated)

53042.1 Da

IEP (calculated)

9.837

GRAVY (calculated)

0.140

Length

484 amino acids

Sequence
(BLAST)

001: MAPASPEELH CAPAPEKTPP PAPEGELRWL RRCAGAAAEG DLRWLRRCVG AATKGFAIGA GLKGGLALFS LLVRLRSRRS PRSRKAGAMT NDEAALLALK
101: ETVRYGMFLG TFAGAFASVD ECIAALWGRK RTARWRSLLS GLIAGPSMLL TGPGTQHTSL AIYILMRAAV LASRCGIKSK RFGKICKPLT WSHGDVFLMC
201: LSSAQILSAY ILQQDSLPSS YKSFLKTHGG KDQSILQGLK EVVNHTAFSN LEAIEKYYKS VGVDIKLDPD MKVPCSIVHG NQSCAGHFIS FLLQAYGRAV
301: PVYIPVYLVP ALVVHRQDLM KRPYTIMGKS LLGTARSSLF LSMYCASAWA WTCFLFRTFE KCSTPLVVLG TFPAGLALFI EKKSRRTEIS LYCLARAIES
401: FFTCMTDAGL CPPILQIKRA DVVVFSMATS IIMHCYAQER EVFRSKYLNV LDWVFGVPLP SEDDSKHHSS TSSDGIKKGI FSIG

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.