CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028006_P001	Maize	plasma membrane	92.78	93.78
Os03t0190900-01	Rice	cytosol	83.01	81.29
TraesCS4A01G406900.1	Wheat	plasma membrane	81.32	79.46
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	81.1	79.09
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	80.68	78.51
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	70.28	69.68
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	71.76	66.67
HORVU4Hr1G078610.3	Barley	mitochondrion	77.71	66.18
AT1G34630.1	Thale cress	nucleus	66.88	65.49
Bra034434.1-P	Field mustard	cytosol	62.21	65.4
CDY28404	Canola	cytosol	62.63	64.13
CDX73310	Canola	plastid	64.33	63.52
CDY03142	Canola	cytosol, peroxisome, plastid	66.03	63.34
Bra028061.1-P	Field mustard	cytosol	66.03	63.08
CDY12034	Canola	cytosol, peroxisome, plastid	65.61	62.55
KRH12626	Soybean	cytosol	65.61	61.8
KRH37587	Soybean	plastid	31.85	57.47
VIT_18s0001g05640.t01	Wine grape	cytosol	66.88	54.69
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	56.69	54.38
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	56.69	54.38
EER97254	Sorghum	plastid	22.93	19.46

Protein Annotations

EnsemblPlants:EER92718	EnsemblPlantsGene:SORBI_3001G474700	EntrezGene:8057635	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	InterPro:TMEM135_N	InterPro:Tmem135	PANTHER:PTHR12459	PANTHER:PTHR12459:SF14
PFAM:PF15982	ProteinID:EER92718	ProteinID:EER92718.1	RefSeq:XP_002465720.1	SEG:seg	unigene:Sbi.3405
UniParc:UPI0001A82961	UniProt:C5WUT1	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:74686281..74690427

Molecular Weight (calculated)

51767.7 Da

IEP (calculated)

10.106

GRAVY (calculated)

0.164

Length

471 amino acids

Sequence
(BLAST)

001: MAPPPPEDLQ CAVNGNCAAP PGKPLAALAA RDGELRWLRR CVEAAAKGFA IGGGLKGGLA LFSVLVRIRS RRSPRSRKAG AMTNDEAVVL AVKETVRYGL
101: FLGTFAGSYV SVDEYIAAVW GRKRTARWRS LLAGLIAGPS MLLTGPGTQH TSLAIYILMR AAVLASRCGI KSKRFGKICK PLTWSHGDVF LMCLSSAQIL
201: SAYILKQESL PSSYKSFLNK HGGKDLSILQ GVKDVVNHTA FSNLAGIEKY YKSVGVDIKL DPNMKVPCSI VHGNQSCTGH VFSFLLQAYG RAVPVYVPVY
301: LVPALVVHRQ HLLKRPYSII GKSFLGVARS SMFLSVYCAS AWAWTCLLFR TFHRANTPLV ILGTFPTGLA LLIEKKSRRI EISLYCLARA IESFFTWMTD
401: AGLCPPILQI KRADVVVFSI ATSIIMHCYA QEREVFRSKY LNVLDWVFGV PPPPDSEDKN CYRPDEAKKC Q

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.