CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 2
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37587	Soybean	plastid	43.2	82.76
Bra034434.1-P	Field mustard	cytosol	62.8	70.09
AT1G34630.1	Thale cress	nucleus	66.4	69.02
CDY28404	Canola	cytosol	62.6	68.04
CDX73310	Canola	plastid	64.2	67.3
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	63.4	66.74
CDY12034	Canola	cytosol, peroxisome, plastid	65.4	66.19
CDY03142	Canola	cytosol, peroxisome, plastid	65.0	66.19
Bra028061.1-P	Field mustard	cytosol	65.2	66.13
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	66.6	65.68
EER92718	Sorghum	cytosol, peroxisome, plastid	61.8	65.61
Os03t0190900-01	Rice	cytosol	62.0	64.45
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	61.4	63.56
TraesCS4A01G406900.1	Wheat	plasma membrane	61.2	63.49
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	61.0	63.02
VIT_18s0001g05640.t01	Wine grape	cytosol	70.2	60.94
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	59.2	60.29
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	58.8	59.88
HORVU4Hr1G078610.3	Barley	mitochondrion	60.6	54.79
Zm00001d027280_P001	Maize	cytosol, plasma membrane, plastid	9.8	38.58
KRG92233	Soybean	plasma membrane	21.2	20.38
KRH34562	Soybean	plasma membrane	20.8	19.89
KRH71877	Soybean	cytosol	4.4	15.28

Protein Annotations

EMBL:ACUP02009357	EnsemblPlants:KRH12626	EnsemblPlantsGene:GLYMA_15G183500	EntrezGene:100806036	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0016020	GO:GO:0016021	InterPro:Tmem135
PANTHER:PTHR12459	PANTHER:PTHR12459:SF14	ProteinID:KRH12626	ProteinID:KRH12626.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295D33D	UniProt:I1MHL0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:18266433..18271120

Molecular Weight (calculated)

54668.5 Da

IEP (calculated)

10.278

GRAVY (calculated)

0.177

Length

500 amino acids

Sequence
(BLAST)

001: MSPSSEHHGG NHRFPGEEIN GFGNGQAEMS APSTASSSAV RCIVDSIPSK EREKLRRILV ASAKGFSIGA GLKGGLALFA ILARLTRKKP PRKGIVVSNG
101: EAIVAALKET LRYGLFLGTF AGTFVSTDEV IGALAGHRRT AKWRALVAGA VAGLSMLLTG LEDQHTSLAI YILMRAAVLA SRCGIKSKRF GKICKPLTWK
201: HGDIFLMCLS SSQILSAYIL KQDSLPASYK SFLNKHGGKD LVILQGVKDI ASGKPFTNLG AIEKYYKTMG VNVKLDPNMK VPCSIVHGNQ SCSGHILSFL
301: VQAYQRALPV YLPVYLIPAL IVHRKGLLKS GTYAGFVMKR ASLEAWTINY SMPYTILAKG LFGTARSSLF LSVYCASAWM WTCFLFRILK RCNIPMVAMG
401: TFPTGLALAI EKKSRRIEIS LYCLARAIES FFTCIADAGY LPQSRRIKRA DVVVFSLSTA IIMHCYAEER EVFRSKYLNV LDWVFGVPPP PCETPRCKDG

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.