CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034434.1-P	Field mustard	cytosol	96.74	99.33
CDX73310	Canola	plastid	93.91	90.57
CDY03142	Canola	cytosol, peroxisome, plastid	82.83	77.6
AT1G34630.1	Thale cress	nucleus	79.78	76.3
CDY12034	Canola	cytosol, peroxisome, plastid	79.57	74.09
EER92718	Sorghum	cytosol, peroxisome, plastid	64.13	62.63
KRH12626	Soybean	cytosol	68.04	62.6
Os03t0190900-01	Rice	cytosol	63.26	60.5
TraesCS4B01G306200.1	Wheat	cytosol, peroxisome, plasma membrane	62.61	59.63
TraesCS4A01G406900.1	Wheat	plasma membrane	62.39	59.54
TraesCS4D01G304400.1	Wheat	cytosol, peroxisome, plasma membrane	62.39	59.3
GSMUA_Achr3P01670_001	Banana	cytosol, peroxisome, plastid	61.09	59.16
GSMUA_Achr6P10380_001	Banana	cytosol, mitochondrion, plastid	64.57	58.58
KRH37587	Soybean	plastid	32.39	57.09
VIT_18s0001g05640.t01	Wine grape	cytosol	69.13	55.21
HORVU4Hr1G078610.3	Barley	mitochondrion	62.61	52.08
PGSC0003DMT400016388	Potato	cytosol, nucleus, peroxisome	55.43	51.93
Solyc04g074140.2.1	Tomato	cytosol, nucleus, peroxisome	55.43	51.93
Zm00001d027280_P001	Maize	cytosol, plasma membrane, plastid	8.91	32.28
CDY05839	Canola	nucleus, peroxisome, plasma membrane	21.3	18.74
CDX71692	Canola	nucleus, peroxisome, plasma membrane	21.3	18.74
CDY38855	Canola	plastid	20.22	17.58
CDY32637	Canola	plastid	20.22	17.58

Protein Annotations

EnsemblPlants:CDY28404	EnsemblPlantsGene:GSBRNA2T00040236001	GO:A0A078GT81	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM135_N	InterPro:Tmem135	PANTHER:PTHR12459	PANTHER:PTHR12459:SF14	PFAM:PF15982	ProteinID:CDY28404
ProteinID:CDY28404.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF8CD	UniProt:A0A078GT81	MapMan:35.2

Description

BnaA05g18360DBnaA05g18360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT81]

Coordinates

chrLK032219:+:241520..243699

Molecular Weight (calculated)

50911.4 Da

IEP (calculated)

10.100

GRAVY (calculated)

0.081

Length

460 amino acids

Sequence
(BLAST)

001: MSPSRETENG SRCSCVIDGV AGDDSGESFD LTCNHCNGSN SIKPDLSSSC SPSGSKSEKL RRITVASIKA FSIGTGIKGG LAIFSIFARL ARRRSRRTGD
101: FSNSEAIAMG IKETLRYGLF LGTFAVAGPS MLLTGPNTQH TSLAVYILMR AAVLASRCGI KSKRFGSFCK PLTWKHGDLF LMCLSSSQIL SSYILKQDSL
201: PSSYKSFLNK QGGKDLSIIQ GVKDIASAKP FTNLRAIEKY YKSVGVDIKL DPNMKVPCSI IHGKESCTKH ALTFFLQAYK RALPVYVPVY LIPALIVHRQ
301: DLLKKQYSIL GKGLLGTARS SLFLSTYCTS SWAWTCLLFR IFETCSIPIV AIATFPTGLA LAIEKKSRRI EISLYCLARA IESFFTCMTD AGYIRPPKIL
401: RRADVVVFSV STAIIMHCYA QEREVFRSKY LNVLDWVCGV PPPPVKKHRD IYFPIIHFRR

Best Arabidopsis Sequence Match ( AT1G34630.1 )
(BLAST)

001: MSPSDESTNG SRCSSCISSD NDGNDFGKSD EFTCKQCKNS DSKSKSKSVN DSDKLRRIIV ASVKGFTIGT GLKGGLAIFS IVARFARRRR SSPQSRKTGE
101: FSNSEAIAMG IKETLRYGLF LGTFAGTFVS VDEAIAALAG DKRTAKWRAL FAGLVAGPSM LLTGPNTQHT SLAVYILMRA AVLASRCGIK SKRFGTICKP
201: LTWKHGDLFL MCLSSSQILS AYILKQESLP SSYKSFLNKQ GGKDLSILQG VKDIATAQPF TNLRAIEKYY KSVGVDIKLD PTMKVPCTII HGNESCVKHG
301: VTFFLQAYKR ALPVYVPVYL IPALIVHRQD LLKKQYSILG KGLLGTARSS LFLATYCSSA WAWTCLLFRT FETCNIPLVA IATFPTGLAL AIEKKSRRIE
401: ISLYCLARAI ESFFTCMTEA GYIRPPKSLR RADVVVFSVS TAIIMHCYAQ ERDVFRSKYL NVLDWVFGVP PPPPAPSCET T

Arabidopsis Description

At1g34630/F12K21.3 [Source:UniProtKB/TrEMBL;Acc:Q8VZG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.