Factsheet for Solyc06g072220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 26583031
nucleus: 28394025
extracellular: 28847647
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17860.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G17860.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069587	Potato	vacuole	81.04	81.43
Solyc06g072230.1.1	Tomato	extracellular	72.04	76.0
AT1G17860.1	Thale cress	extracellular	44.55	47.96
CDX96746	Canola	extracellular	44.08	47.69
Solyc03g020010.1.1	Tomato	extracellular	45.02	46.34
Bra016580.1-P	Field mustard	extracellular	42.65	46.15
CDX83886	Canola	extracellular	42.65	46.15
Bra025942.1-P	Field mustard	extracellular	41.23	45.31
CDY19181	Canola	extracellular	40.76	44.79
CDY26209	Canola	extracellular	40.28	44.27
Solyc06g072210.1.1	Tomato	extracellular	35.07	38.14
GSMUA_Achr5P19420_001	Banana	extracellular	39.81	37.84
GSMUA_Achr1P01860_001	Banana	extracellular	35.07	37.0
Solyc11g022590.1.1	Tomato	extracellular	37.91	35.56
Solyc03g098670.1.1	Tomato	extracellular	32.7	34.33
Os04t0526600-01	Rice	extracellular	31.28	33.0
HORVU2Hr1G090750.1	Barley	extracellular	18.48	31.97
Solyc03g098710.1.1	Tomato	extracellular	31.28	29.46
TraesCS2B01G392500.1	Wheat	golgi	27.49	28.71
Solyc03g098740.1.1	Tomato	extracellular	27.01	28.64
TraesCS2D01G371800.1	Wheat	extracellular	27.01	28.08
TraesCS2A01G375400.1	Wheat	extracellular, vacuole	27.01	28.08
Solyc03g098730.1.1	Tomato	nucleus	32.7	28.05
Zm00001d002960_P001	Maize	extracellular	19.43	26.97
EES12537	Sorghum	vacuole	29.38	26.96
KXG23922	Sorghum	extracellular	23.7	23.04

Protein Annotations

Gene3D:2.80.10.50	MapMan:35.1	GO:GO:0003674	GO:GO:0004866	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010951	GO:GO:0019538	GO:GO:0030234	MEROPS:I03.030	UniProt:K4C8U3
InterPro:Kunitz_inhibitor_STI-like_sf	PFAM:PF00197	PRINTS:PR00291	ScanProsite:PS00283	PANTHER:PTHR33107	PANTHER:PTHR33107:SF5
InterPro:Prot_inh_Kunz-lg	SMART:SM00452	SUPFAM:SSF50386	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g072220.1	EnsemblPlants:Solyc06g072220.1.1
UniParc:UPI0002765786	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44506328..44506963

Molecular Weight (calculated)

23334.6 Da

IEP (calculated)

9.635

GRAVY (calculated)

0.123

Length

211 amino acids

Sequence
(BLAST)

001: MNTLLLLFSL SLFPFILCVP NPSRLLLASS SSSPVLDING DKVKAGPNYF ILPVIQGKGG GLYPSNVKQH NSTCPRDIIQ ETDDVQEGLP VVFTRLDAKK
101: GVVRVSTDVN VRFFTPTICA RETIWKLGAY DDKLKQYFVV TGGVEGNPGP KTVGNWFKIV KFGSGYKFVF CPSVCKFCKV ICKDVGVFMK DGVRFLALSD
201: TPFEVKFKKT F

Best Arabidopsis Sequence Match ( AT1G17860.1 )
(BLAST)

001: MSSLLYIFLL LAVFISHRGV TTEAAVEPVK DINGKSLLTG VNYYILPVIR GRGGGLTMSN LKTETCPTSV IQDQFEVSQG LPVKFSPYDK SRTIPVSTDV
101: NIKFSPTSIW ELANFDETTK QWFISTCGVE GNPGQKTVDN WFKIDKFEKD YKIRFCPTVC NFCKVICRDV GVFVQDGKRR LALSDVPLKV MFKRAY

Arabidopsis Description

KTI2Kunitz trypsin inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMU2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.