Factsheet for Solyc03g020010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039353	Potato	extracellular	93.17	93.17
Solyc06g072230.1.1	Tomato	extracellular	49.76	51.0
Solyc06g072220.1.1	Tomato	extracellular	46.34	45.02
GSMUA_Achr1P01860_001	Banana	extracellular	42.93	44.0
GSMUA_Achr5P19420_001	Banana	extracellular	47.32	43.69
Solyc03g098670.1.1	Tomato	extracellular	41.46	42.29
Solyc06g072210.1.1	Tomato	extracellular	37.07	39.18
Os04t0526600-01	Rice	extracellular	35.12	36.0
Solyc03g098740.1.1	Tomato	extracellular	34.63	35.68
TraesCS2B01G392500.1	Wheat	golgi	33.66	34.16
TraesCS2A01G375400.1	Wheat	extracellular, vacuole	33.17	33.5
TraesCS2D01G371800.1	Wheat	extracellular	32.68	33.0
HORVU2Hr1G090750.1	Barley	extracellular	19.51	32.79
Solyc11g022590.1.1	Tomato	extracellular	32.68	29.78
Zm00001d002960_P001	Maize	extracellular	21.95	29.61
Solyc03g098730.1.1	Tomato	nucleus	35.12	29.27
Solyc03g098710.1.1	Tomato	extracellular	31.71	29.02
EES12537	Sorghum	vacuole	29.27	26.09
KXG23922	Sorghum	extracellular	27.32	25.81

Protein Annotations

Gene3D:2.80.10.50	MapMan:35.1	ProteinID:AAC63057.1	GO:GO:0003674	GO:GO:0004866	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010951	GO:GO:0019538	GO:GO:0030234	MEROPS:I03.030
InterPro:Kunitz_inhibitor_STI-like_sf	UniProt:O48625	PFAM:PF00197	PRINTS:PR00291	ScanProsite:PS00283	PANTHER:PTHR33107
InterPro:Prot_inh_Kunz-lg	SMART:SM00452	SUPFAM:SSF50386	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g020010.1	EnsemblPlants:Solyc03g020010.1.1
UniParc:UPI00000AB6DD	:	:	:	:	:

Description

Lemir [Source:UniProtKB/TrEMBL;Acc:O48625]

Coordinates

chr3:-:61222484..61223101

Molecular Weight (calculated)

22946.8 Da

IEP (calculated)

4.617

GRAVY (calculated)

0.024

Length

205 amino acids

Sequence
(BLAST)

001: MKINQLFFPF LILAISFNSL LSSAAESPPE VVDIDGKILR TGVDYYILPV VRGRGGGLTM DSIGDKMCPL DAVVQEHNEI DQGLPLTFTP VDPKKGVIRE
101: STDLNIIFSA NSICVQTTQW KLDDFDETTG QYFITLGGDQ GNPGVETISN WFKIEKYDRD YKLLYCPTVC DFCKVICRDI GIFIQDGVRR LALSDVPFKV
201: MFKKA

Best Arabidopsis Sequence Match ( AT1G17860.1 )
(BLAST)

001: MSSLLYIFLL LAVFISHRGV TTEAAVEPVK DINGKSLLTG VNYYILPVIR GRGGGLTMSN LKTETCPTSV IQDQFEVSQG LPVKFSPYDK SRTIPVSTDV
101: NIKFSPTSIW ELANFDETTK QWFISTCGVE GNPGQKTVDN WFKIDKFEKD YKIRFCPTVC NFCKVICRDV GVFVQDGKRR LALSDVPLKV MFKRAY

Arabidopsis Description

KTI2Kunitz trypsin inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMU2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.