Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- mitochondrion 5
- cytosol 1
- plastid 1
- extracellular 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08230.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g013100.1.1 | Tomato | nucleus | 50.45 | 88.89 |
| PGSC0003DMT400036564 | Potato | mitochondrion | 73.87 | 83.67 |
| KRH16578 | Soybean | mitochondrion | 75.68 | 77.06 |
| KRH18786 | Soybean | mitochondrion | 74.77 | 76.15 |
| Bra000643.1-P | Field mustard | mitochondrion | 64.86 | 64.29 |
| CDY34007 | Canola | mitochondrion | 64.86 | 64.29 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 60.36 | 62.62 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 60.36 | 62.62 |
| AT4G08230.1 | Thale cress | cytosol | 63.06 | 61.95 |
| Os03t0263700-01 | Rice | cytosol | 58.56 | 60.75 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 37.84 | 60.0 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 55.86 | 59.05 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 60.36 | 57.76 |
| Zm00001d028531_P001 | Maize | plasma membrane | 56.76 | 57.27 |
| EER95136 | Sorghum | mitochondrion | 56.76 | 55.26 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 54.95 | 54.95 |
| CDX83140 | Canola | mitochondrion | 64.86 | 50.0 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 59.46 | 39.52 |
Protein Annotations
| EntrezGene:100250629 | wikigene:100250629 | MapMan:35.2 | EMBL:AM487693 | ProteinID:CAN71044 | ProteinID:CAN71044.1 |
| ProteinID:CBI19055 | ProteinID:CBI19055.3 | UniProt:E0CRA1 | EMBL:FN595227 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0006816 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019725 |
| GO:GO:0032469 | EntrezGene:LOC100250629 | wikigene:LOC100250629 | PFAM:PD353114 | PFAM:PF10961 | PANTHER:PTHR16875 |
| InterPro:Se_SelK/SelG | TMHMM:TMhelix | UniParc:UPI0001BE1370 | ArrayExpress:VIT_18s0001g03450 | EnsemblPlantsGene:VIT_18s0001g03450 | EnsemblPlants:VIT_18s0001g03450.t01 |
| RefSeq:XP_002285840 | RefSeq:XP_002285840.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:+:3320975..3328281
Molecular Weight (calculated)
11904.4 Da
IEP (calculated)
10.245
GRAVY (calculated)
-0.170
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYVERVVAV RKQVCCVVKS NRSIWRLRTI TDFFWAIVNF IGVFFVTMFS MEKSDAYRKS SGSGKKWDGG GPGGPGRGPY GGGPRGPPRG LDNVRGIDHS
101: ALPACGSCCG G
101: ALPACGSCCG G
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.