Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34007 | Canola | mitochondrion | 89.38 | 90.18 |
| Bra000643.1-P | Field mustard | mitochondrion | 89.38 | 90.18 |
| KRH18786 | Soybean | mitochondrion | 74.34 | 77.06 |
| KRH16578 | Soybean | mitochondrion | 73.45 | 76.15 |
| PGSC0003DMT400036564 | Potato | mitochondrion | 61.06 | 70.41 |
| CDX83140 | Canola | mitochondrion | 89.38 | 70.14 |
| Solyc11g013100.1.1 | Tomato | nucleus | 37.17 | 66.67 |
| Os03t0263700-01 | Rice | cytosol | 61.95 | 65.42 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 60.18 | 63.55 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 60.18 | 63.55 |
| VIT_18s0001g03450.t01 | Wine grape | mitochondrion | 61.95 | 63.06 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 56.64 | 60.95 |
| Zm00001d028531_P001 | Maize | plasma membrane | 59.29 | 60.91 |
| EER95136 | Sorghum | mitochondrion | 60.18 | 59.65 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 35.4 | 57.14 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 55.75 | 56.76 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 54.87 | 53.45 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 59.29 | 40.12 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826373 | ProteinID:AEE82610.1 | ProteinID:AEE82611.1 | ArrayExpress:AT4G08230 | EnsemblPlantsGene:AT4G08230 |
| RefSeq:AT4G08230 | TAIR:AT4G08230 | RefSeq:AT4G08230-TAIR-G | EnsemblPlants:AT4G08230.1 | TAIR:AT4G08230.1 | EMBL:AY072406 |
| EMBL:BT000222 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006816 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019725 | GO:GO:0032469 | RefSeq:NP_001190688.1 | RefSeq:NP_192563.2 |
| PFAM:PF10961 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR16875 |
| UniProt:Q8VY68 | InterPro:Se_SelK/SelG | TMHMM:TMhelix | UniParc:UPI00000AC5B1 | SEG:seg | : |
Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
Coordinates
chr4:-:5187785..5189794
Molecular Weight (calculated)
11549.0 Da
IEP (calculated)
10.658
GRAVY (calculated)
-0.303
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.