Factsheet for TraesCS6D01G212900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	golgi, peroxisome, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plasma membrane: 23285044

plastid: 22160430
golgi: 25769308
unclear: 25769308

gfp PMID: 23285044 doi

S Zhou, W Hu, X Deng, Z Ma, L Chen, C Huang, C Wang, J Wang, Y He, G Yang, G He

Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology, Chinese National Center of Plant Gene Research (Wuhan) HUST Part, Key Laboratory of Molecular Biophysics of Chinese Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology (HUST), Wuhan, China.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G222100.1	Wheat	golgi, peroxisome, plasma membrane	100.0	100.0
TraesCS6B01G259000.1	Wheat	golgi, peroxisome, plasma membrane	99.65	99.65
Os02t0629200-02	Rice	plasma membrane	94.41	93.75
GSMUA_Achr4P20780_001	Banana	extracellular	61.89	90.31
Zm00001d017288_P001	Maize	plasma membrane	90.91	90.28
GSMUA_AchrUn_...	Banana	extracellular	61.54	90.26
Zm00001d051174_P002	Maize	plasma membrane	90.91	89.97
GSMUA_Achr8P18910_001	Banana	extracellular	61.54	89.8
EES05459	Sorghum	plasma membrane	90.56	89.62
GSMUA_Achr11P...	Banana	extracellular	60.84	88.78
TraesCS2D01G376100.1	Wheat	plasma membrane	89.86	88.62
TraesCS2D01G376000.1	Wheat	golgi	89.16	87.93
HORVU2Hr1G089940.3	Barley	plasma membrane	89.16	87.93
TraesCS2D01G206300.1	Wheat	golgi	85.31	84.14
TraesCS5D01G112500.1	Wheat	plasma membrane	81.82	81.82
TraesCS2D01G063900.1	Wheat	plasma membrane	73.43	73.94
TraesCS5D01G561700.1	Wheat	golgi, peroxisome, plasma membrane	72.03	72.54
TraesCS5D01G548900.1	Wheat	golgi, peroxisome, plasma membrane	69.23	68.51
TraesCS5D01G560400.1	Wheat	golgi, peroxisome, plasma membrane	69.58	68.38
TraesCS4D01G355600.1	Wheat	golgi, peroxisome, plasma membrane	69.58	68.15
TraesCS5D01G338200.1	Wheat	plasma membrane	67.83	66.67
TraesCS6D01G389500.1	Wheat	plasma membrane	66.78	65.41
TraesCS6D01G389400.1	Wheat	plasma membrane	66.78	65.41
TraesCS6D01G227500.1	Wheat	golgi	66.08	65.17
TraesCS5D01G185400.1	Wheat	plasma membrane	66.08	64.73
TraesCS6D01G076400.1	Wheat	golgi, peroxisome, plasma membrane	65.38	63.39
TraesCS7D01G192200.1	Wheat	golgi, peroxisome, plasma membrane	60.84	57.24
TraesCS2D01G404800.2	Wheat	golgi, peroxisome, plasma membrane	61.89	56.37
TraesCS2D01G411400.1	Wheat	plasma membrane	31.82	36.69
TraesCS6D01G232100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	31.82	36.55
TraesCS3D01G540900.1	Wheat	plasma membrane	30.77	34.92
TraesCS3D01G163400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	29.37	34.15
TraesCS7D01G339600.1	Wheat	plasma membrane	33.22	34.05
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	30.42	33.85
TraesCS2D01G370800.1	Wheat	plasma membrane	29.02	31.32
TraesCS2D01G411500.1	Wheat	endoplasmic reticulum	27.62	30.15
TraesCS1D01G175200.1	Wheat	unclear	27.27	29.66
TraesCS4D01G344300.1	Wheat	plasma membrane	25.87	29.02

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF137	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G212900
EnsemblPlants:TraesCS6D01G212900.1	TIGR:cd00333	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:302037128..302040259

Molecular Weight (calculated)

30356.8 Da

IEP (calculated)

8.279

GRAVY (calculated)

0.466

Length

286 amino acids

Sequence
(BLAST)

001: MAKDIEAAPQ GGEFSTKDYS DPPPAPIVDF EELTKWSLYR AVIAEFVATL LFLYITVATV IGYKHQSDPT VNTTDAACSG VGILGIAWAF GGMIFVLVYC
101: TAGVSGGHIN PAVTFGLFLA RKVSLIRALL YIIAQCLGAI CGVGLVKGFQ SSYYVRYGGG ANELSAGYSK GTGLAAEIIG TFVLVYTVFS ATDPKRNARD
201: SHIPVLAPLP IGFAVFMVHL ATIPITGTGI NPARSLGAAV IYNKDKAWDD QWIFWVGPLI GAAIAAAYHQ YVLRASAAKL GSYRSN

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.