Factsheet for VIT_18s0117g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0117g00210.t01	Wine grape	nucleus	81.55	73.64
VIT_17s0000g02650.t01	Wine grape	nucleus	40.34	56.97
VIT_04s0023g03710.t01	Wine grape	nucleus	48.5	46.69
VIT_03s0038g02310.t01	Wine grape	nucleus	49.79	46.22
VIT_01s0011g04760.t01	Wine grape	nucleus	44.21	45.78
VIT_14s0006g01620.t01	Wine grape	nucleus	43.35	44.3
VIT_17s0000g02660.t01	Wine grape	nucleus	39.91	40.61
VIT_11s0016g01310.t01	Wine grape	nucleus	36.91	39.09
VIT_07s0130g00040.t01	Wine grape	nucleus	48.5	38.97
VIT_04s0008g01870.t01	Wine grape	nucleus	30.9	36.55
VIT_09s0002g01380.t01	Wine grape	nucleus	30.47	34.98
VIT_17s0000g08480.t01	Wine grape	nucleus	30.47	32.87
VIT_14s0066g01220.t01	Wine grape	nucleus	30.47	32.72
VIT_04s0008g01800.t01	Wine grape	nucleus	36.91	32.45
VIT_15s0046g00170.t01	Wine grape	nucleus	39.48	32.17
VIT_01s0127g00730.t01	Wine grape	nucleus	30.04	31.82
VIT_11s0016g05660.t01	Wine grape	nucleus	30.04	31.39
VIT_11s0016g01320.t01	Wine grape	nucleus	37.77	30.99
VIT_04s0008g01840.t01	Wine grape	nucleus	30.04	30.97
VIT_13s0084g00530.t01	Wine grape	nucleus	34.76	30.8
VIT_11s0016g05690.t01	Wine grape	nucleus	29.18	30.49
VIT_04s0008g01810.t01	Wine grape	nucleus	34.76	29.35
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	38.2	28.53
VIT_08s0007g07230.t01	Wine grape	nucleus	38.63	28.12
VIT_04s0008g01820.t01	Wine grape	nucleus	35.62	27.95
VIT_11s0016g01300.t01	Wine grape	nucleus	36.05	27.91
VIT_09s0002g01410.t01	Wine grape	nucleus	34.33	27.03
VIT_04s0008g01830.t01	Wine grape	nucleus	32.62	26.95
VIT_09s0002g01400.t01	Wine grape	nucleus	39.48	26.82
VIT_07s0005g01210.t01	Wine grape	nucleus	37.34	23.71
VIT_05s0077g01360.t01	Wine grape	nucleus	36.48	22.19

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ProteinID:CCB45119	ProteinID:CCB45119.1	UniProt:F6GYT3	EMBL:FN594973
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF741	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000210A041	ArrayExpress:VIT_18s0117g00200	EnsemblPlantsGene:VIT_18s0117g00200	EnsemblPlants:VIT_18s0117g00200.t01	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:23406742..23417530

Molecular Weight (calculated)

26656.6 Da

IEP (calculated)

9.667

GRAVY (calculated)

-0.956

Length

233 amino acids

Sequence
(BLAST)

001: MGRKPCCDKA HTNRGSWSKE EDDRLIHYIR LNGHGFWRSL PKAAGLLRCG KSCRLRWINY LRPDVKRGNF AIDEDELIIK LHKLLGNKWS LIAGRLPGRT
101: DNEIKNHWNT HIRRKLISGG INPKTHQPTK PITTEETNCS SALTITTTTD NTEKPQQPPP KQQPNQFPGE EEEHINLELT LALFPTPSES TAESKLRRTT
201: TPDGPDEAFL VTKHYSNLIP KRGEKNNQHY LET

Best Arabidopsis Sequence Match ( AT4G34990.1 )
(BLAST)

001: MGRSPCCEKD HTNKGAWTKE EDDKLISYIK AHGEGCWRSL PRSAGLQRCG KSCRLRWINY LRPDLKRGNF TLEEDDLIIK LHSLLGNKWS LIATRLPGRT
101: DNEIKNYWNT HVKRKLLRKG IDPATHRPIN ETKTSQDSSD SSKTEDPLVK ILSFGPQLEK IANFGDERIQ KRVEYSVVEE RCLDLNLELR ISPPWQDKLH
201: DERNLRFGRV KYRCSACRFG FGNGKECSCN NVKCQTEDSS SSSYSSTDIS SSIGYDFLGL NNTRVLDFST LEMK

Arabidopsis Description

MYB32Transcription factor MYB32 [Source:UniProtKB/Swiss-Prot;Acc:O49608]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.