Factsheet for VIT_18s0117g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0117g00200.t01	Wine grape	nucleus	73.64	81.55
VIT_17s0000g02650.t01	Wine grape	nucleus	35.66	55.76
VIT_04s0023g03710.t01	Wine grape	nucleus	47.67	50.83
VIT_03s0038g02310.t01	Wine grape	nucleus	48.84	50.2
VIT_01s0011g04760.t01	Wine grape	nucleus	39.92	45.78
VIT_14s0006g01620.t01	Wine grape	nucleus	39.92	45.18
VIT_07s0130g00040.t01	Wine grape	nucleus	46.9	41.72
VIT_17s0000g02660.t01	Wine grape	nucleus	36.82	41.48
VIT_11s0016g01310.t01	Wine grape	nucleus	32.95	38.64
VIT_04s0008g01870.t01	Wine grape	nucleus	27.91	36.55
VIT_09s0002g01380.t01	Wine grape	nucleus	28.68	36.45
VIT_15s0046g00170.t01	Wine grape	nucleus	37.98	34.27
VIT_01s0127g00730.t01	Wine grape	nucleus	29.07	34.09
VIT_14s0066g01220.t01	Wine grape	nucleus	28.29	33.64
VIT_04s0008g01800.t01	Wine grape	nucleus	34.11	33.21
VIT_04s0008g01840.t01	Wine grape	nucleus	29.07	33.19
VIT_17s0000g08480.t01	Wine grape	nucleus	27.52	32.87
VIT_11s0016g05660.t01	Wine grape	nucleus	27.52	31.84
VIT_11s0016g05690.t01	Wine grape	nucleus	26.74	30.94
VIT_13s0084g00530.t01	Wine grape	nucleus	31.4	30.8
VIT_04s0008g01810.t01	Wine grape	nucleus	32.95	30.8
VIT_11s0016g01320.t01	Wine grape	nucleus	33.33	30.28
VIT_09s0002g01410.t01	Wine grape	nucleus	32.95	28.72
VIT_11s0016g01300.t01	Wine grape	nucleus	32.95	28.24
VIT_06s0004g00570.t01	Wine grape	nucleus, plastid	34.11	28.21
VIT_04s0008g01820.t01	Wine grape	nucleus	32.17	27.95
VIT_09s0002g01400.t01	Wine grape	nucleus	36.82	27.7
VIT_08s0007g07230.t01	Wine grape	nucleus	33.72	27.19
VIT_04s0008g01830.t01	Wine grape	nucleus	28.68	26.24
VIT_07s0005g01210.t01	Wine grape	nucleus	35.27	24.8
VIT_05s0077g01360.t01	Wine grape	nucleus	35.27	23.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ProteinID:CCB45118	ProteinID:CCB45118.1	UniProt:F6GYT2	EMBL:FN594973
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930	InterPro:Myb-like_dom
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF741
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000210A040	ArrayExpress:VIT_18s0117g00210	EnsemblPlantsGene:VIT_18s0117g00210
EnsemblPlants:VIT_18s0117g00210.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:23419946..23420963

Molecular Weight (calculated)

29076.5 Da

IEP (calculated)

8.109

GRAVY (calculated)

-0.745

Length

258 amino acids

Sequence
(BLAST)

001: MGRKPCCDKA HTNRGAWTKE EDDRLIEYIR MNGHGSWRSL PKAAVFSRLP NGGLRFRVWF IVGLIGLLRC GKSCRLRWIN YLRPDVKRGN FTIDEDELII
101: KLHKLLGNKW SLIAGRLPGR TDNEIKNHWN THIRRRLLRG GIDPKTHQPT KPTTTEEGNC SSALTAATID GAEKPPQPPP EQQPNQFPDG EEEHVNLELT
201: LALFPTPSES TAESKLRRTT APDGPDEDAG ACVGCCQLSN EDSHQCQKCY NQDFNLTL

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.