Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- golgi 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88672 | Canola | extracellular | 44.54 | 62.35 |
| AT5G58375.1 | Thale cress | extracellular | 44.54 | 62.35 |
| Bra002655.1-P | Field mustard | extracellular | 44.54 | 60.92 |
| CDY70047 | Canola | extracellular | 44.54 | 60.92 |
| KRG98169 | Soybean | endoplasmic reticulum, extracellular | 45.38 | 60.67 |
| Bra006770.1-P | Field mustard | extracellular | 43.7 | 60.47 |
| CDY43858 | Canola | extracellular | 43.7 | 59.77 |
| GSMUA_Achr7P22160_001 | Banana | extracellular | 42.86 | 58.62 |
| GSMUA_Achr11P... | Banana | extracellular | 41.18 | 58.33 |
| CDY71001 | Canola | extracellular | 42.86 | 57.95 |
| KRH30128 | Soybean | extracellular | 42.02 | 56.18 |
| GSMUA_Achr4P00210_001 | Banana | extracellular | 40.34 | 55.17 |
| HORVU5Hr1G046850.2 | Barley | extracellular | 40.34 | 54.55 |
| TraesCS5D01G144700.1 | Wheat | extracellular | 40.34 | 54.55 |
| TraesCS5A01G148100.1 | Wheat | extracellular | 40.34 | 54.55 |
| Zm00001d023366_P001 | Maize | extracellular, golgi | 41.18 | 54.44 |
| TraesCS5B01G146600.1 | Wheat | extracellular | 39.5 | 53.41 |
| GSMUA_Achr11P... | Banana | extracellular | 36.97 | 51.16 |
| EES16622 | Sorghum | extracellular, golgi | 37.82 | 51.14 |
| KRH72810 | Soybean | extracellular | 42.02 | 50.51 |
| Zm00001d044691_P001 | Maize | extracellular, golgi | 36.13 | 50.0 |
| Os11t0113300-01 | Rice | extracellular, golgi | 36.97 | 49.44 |
| TraesCS4D01G118300.1 | Wheat | extracellular | 41.18 | 49.0 |
| TraesCS4A01G195200.1 | Wheat | extracellular | 41.18 | 49.0 |
| TraesCS4B01G120200.1 | Wheat | extracellular | 40.34 | 48.0 |
| KRH17161 | Soybean | extracellular | 38.66 | 47.42 |
| VIT_11s0149g00310.t01 | Wine grape | extracellular | 30.25 | 40.91 |
| VIT_08s0007g07390.t01 | Wine grape | extracellular | 29.41 | 39.33 |
| Os12t0112800-00 | Rice | extracellular, golgi | 39.5 | 35.61 |
| HORVU4Hr1G022580.2 | Barley | extracellular | 28.57 | 29.06 |
Protein Annotations
| EntrezGene:100267277 | wikigene:100267277 | MapMan:35.2 | ProteinID:CBI15836 | ProteinID:CBI15836.3 | UniProt:D7SJL0 |
| EMBL:FN594951 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100267277 | wikigene:LOC100267277 |
| PANTHER:PTHR34132 | PANTHER:PTHR34132:SF2 | TIGR:TC60820 | TMHMM:TMhelix | UniParc:UPI0001BE1091 | ArrayExpress:VIT_06s0004g07850 |
| EnsemblPlantsGene:VIT_06s0004g07850 | EnsemblPlants:VIT_06s0004g07850.t01 | unigene:Vvi.9970 | RefSeq:XP_002269081 | RefSeq:XP_002269081.1 | SEG:seg |
Description
No Description!
Coordinates
chr6:-:8614388..8615839
Molecular Weight (calculated)
13049.8 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.098
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYQKLTVTN LHLRMVVVPH RVSPPAGEGK IEMCPLRLIL IFLSATLAGF FVLRNLKSQP QVVADAPADG DRDDNDPHDS TPKSSKVLSA IGSGFWTCVD
101: MASGRYLWRH LVSSSKPSD
101: MASGRYLWRH LVSSSKPSD
1: MCPLRLILIF LSATLAGFFV LQKLNSTSDD PLDDSFTDAE HADDDSVSGF SKVGMAMKSG FWTCVDMASG RYLWNNLCSN AKRSS
Arabidopsis Description
At5g58375 [Source:UniProtKB/TrEMBL;Acc:Q7XA76]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.