Factsheet for VIT_06s0004g03810.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22970	Soybean	cytosol, plastid	84.38	84.3
KRH10347	Soybean	plastid	84.29	84.21
KRG88692	Soybean	cytosol	81.33	81.41
PGSC0003DMT400040181	Potato	cytosol, plastid	81.52	81.29
KRH24979	Soybean	cytosol	80.19	80.81
Solyc11g072820.1.1	Tomato	cytosol, plastid	80.76	80.61
Bra033832.1-P	Field mustard	cytosol	78.76	78.61
AT3G45850.1	Thale cress	cytosol, plastid	79.24	78.12
PGSC0003DMT400078142	Potato	cytosol, plastid	77.62	78.07
CDX82979	Canola	cytosol, plastid	78.86	77.97
Solyc06g075580.2.1	Tomato	cytosol, plastid	77.24	77.68
CDY23691	Canola	cytosol, plastid	78.29	77.4
KRH38089	Soybean	cytosol	28.1	76.82
GSMUA_Achr9P04070_001	Banana	cytosol	75.43	75.36
GSMUA_Achr2P19060_001	Banana	cytosol	73.33	75.05
GSMUA_Achr7P15420_001	Banana	cytosol	74.29	73.93
Os05t0117798-01	Rice	cytosol	72.0	71.59
EES18930	Sorghum	cytosol	70.86	70.72
GSMUA_Achr6P33290_001	Banana	cytosol	69.33	70.47
TraesCS1D01G055200.1	Wheat	cytosol	71.14	70.47
TraesCS1B01G071500.1	Wheat	cytosol	71.14	70.47
TraesCS1A01G054400.2	Wheat	cytosol	71.14	69.88
Zm00001d035526_P010	Maize	cytosol	69.71	69.06
HORVU1Hr1G010810.1	Barley	cytosol	70.76	68.35
TraesCS5D01G162500.1	Wheat	cytosol, plastid	60.38	59.7
HORVU5Hr1G049180.2	Barley	plastid	60.19	59.4
TraesCS5B01G156500.1	Wheat	plastid	60.1	59.3
TraesCS5A01G157200.1	Wheat	plastid	59.62	58.83
EES09071	Sorghum	plastid	59.24	56.7
Zm00001d030230_P003	Maize	plastid	56.86	54.52
OQU78566	Sorghum	cytosol	59.52	53.46
VIT_08s0040g02590.t01	Wine grape	plastid	50.76	50.81
VIT_08s0007g03090.t01	Wine grape	nucleus	47.33	49.26
VIT_16s0050g02080.t01	Wine grape	cytosol, mitochondrion	5.52	25.44
VIT_18s0001g08700.t01	Wine grape	cytosol	17.43	21.79
VIT_18s0001g10090.t01	Wine grape	cytosol	20.76	20.24
VIT_08s0007g06820.t01	Wine grape	plastid	19.14	20.14
VIT_07s0031g00130.t01	Wine grape	cytosol	20.57	20.02
VIT_11s0016g00460.t01	Wine grape	cytosol	16.86	18.77
VIT_17s0000g03290.t01	Wine grape	cytosol, plastid	16.95	18.5
VIT_03s0038g00700.t01	Wine grape	nucleus	16.76	18.16
VIT_03s0038g00350.t01	Wine grape	plastid	18.67	17.8
VIT_18s0001g02380.t01	Wine grape	plastid	18.76	17.4
VIT_04s0023g03060.t01	Wine grape	cytosol	15.9	17.16
VIT_18s0001g13580.t01	Wine grape	cytosol	15.81	17.08
VIT_05s0029g00400.t01	Wine grape	cytosol, plastid	21.33	16.72
VIT_18s0001g07550.t01	Wine grape	cytosol	18.29	16.08
VIT_19s0090g01600.t01	Wine grape	cytosol, plastid	18.1	15.87
VIT_08s0007g05340.t01	Wine grape	cytosol	18.86	15.84
VIT_06s0009g00820.t01	Wine grape	cytosol	20.1	14.5
VIT_05s0020g00620.t01	Wine grape	cytosol	20.57	11.11
VIT_03s0063g01120.t01	Wine grape	cytosol	23.9	9.34

Protein Annotations

EntrezGene:100255345	wikigene:100255345	MapMan:20.1.3.4	Gene3D:3.40.850.10	ProteinID:CBI16219	ProteinID:CBI16219.3
ncoils:Coil	UniProt:D7SKP1	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774
GO:GO:0003777	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005871	GO:GO:0005874	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0016787	InterPro:IPR001752
InterPro:IPR036961	InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	EntrezGene:LOC100255345
wikigene:LOC100255345	InterPro:P-loop_NTPase	PFAM:PF00225	PRINTS:PR00380	ScanProsite:PS00411	PFscan:PS50067
PANTHER:PTHR24115	PANTHER:PTHR24115:SF515	SMART:SM00129	SUPFAM:SSF52540	TIGR:TC61690	TIGR:TC62523
UniParc:UPI00015C7A51	ArrayExpress:VIT_06s0004g03810	EnsemblPlantsGene:VIT_06s0004g03810	EnsemblPlants:VIT_06s0004g03810.t01	unigene:Vvi.6222	RefSeq:XP_002284615
RefSeq:XP_002284615.2	RefSeq:XP_010651085.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:4779880..4787342

Molecular Weight (calculated)

117857.0 Da

IEP (calculated)

5.537

GRAVY (calculated)

-0.602

Length

1050 amino acids

Sequence
(BLAST)

0001: METSQLQRRG GLVSLSPSQT PRSSDKSARD LRSGDSNLSN KHDKDKGVNV QVLLRCRPLS EDELRVNTPV VISCHENRRE VCAVQNIANK QIDRTFMFDK
0101: VFGPTSQQKD LYDQAVSPIV NEVLEGYNCT IFAYGQTGTG KTYTMEGGAR KKNGEFPNDA GVIPRAVRQI FDILEAQNAE YSMKVTFLEL YNEEITDLLA
0201: PEECTKFIDD KTKKPIALME DGKGGVFVRG LEEEIVCTAN EIYKILEKGS AKRRTAETLL NKQSSRSHSI FSITIHIKEC TPEGEEMIKC GKLNLVDLAG
0301: SENISRSGAR EGRAREAGEI NKSLLTLGRV INALVEHSGH VPYRDSKLTR LLRDSLGGKT KTCIIATISP SIHCLEETLS TLDYAHRAKN IKNKPEVNQK
0401: MMKSALIKDL YSEIDRLKQE VYAAREKNGI YIPRDRYLNE EAEKKAMAEK IERMELLSDS KDKQLVELQE LYNSQQLLTG ELSDKLEKTE KKLEETEHTL
0501: FDLEERHRQA NATIKEKEYL ISNLLKSEKA LVERAFELRA ELENAASDVS SLFAKIERKD KIEDGNRIII QKFQSQLTQQ LEALHKTVAA STTQQEQQLK
0601: DMEEDMQSFV STKAEATEEL RGRLAKLKTM YGSGIKALDD ITGELDGNSH STFGHLNSEV AKHSTALEDL FKGIALEADA LLNDLQSSLY NQEEKLTAYA
0701: QQQREAHSRA VETTRSISKI TVNFFKTLDG HASKLTEIVE EAQTVNDQKL SELEKKFEEC AANEERQLLE KVAELLASSN ARKKNLVQMA VHGLRESAAS
0801: RTSKLQQEMA TMQESTSSVK AEWTVYMDKT ETHYLEDTAA VENQKKDLGE VLQDCLEKAK MGTQQWRNAQ ESLLSLENRN VASVESIVRG GMEANQNLRT
0901: RFSSAVSSAL EDVDVANKNL LSSIDHSLQL DHEACGNLDS MIVPCCGDLR ELNSGHYHKI VEITENAGKC LLDEYVLDEQ SCSTPRKRSF NLPSMASIEE
1001: LRTPAFDELL KSFWESKSAK QANGDVKHIV GAYEGAQSFR DSRVPLTAIN

Best Arabidopsis Sequence Match ( AT3G45850.1 )
(BLAST)

0001: MVDNFSRMDS IQQRRGGIVS LSPAQTPRSS DKSARESRSS ESNSTNRNDK EKGVNVQVIL RCRPLSEDEA RIHTPVVISC NENRREVAAT QSIAGKHIDR
0101: HFAFDKVFGP ASQQKDLYDQ AICPIVFEVL EGYNCTIFAY GQTGTGKTYT MEGGARKKNG EFPSDAGVIP RAVKQIFDIL EAQGAEYSMK VTFLELYNEE
0201: ISDLLAPEET IKFVDEKSKK SIALMEDGKG SVFVRGLEEE IVSTANEIYK ILEKGSAKRR TAETLLNKQS SRSHSIFSIT IHIKENTPEG EEMIKCGKLN
0301: LVDLAGSENI SRSGAREGRA REAGEINKSL LTLGRVINAL VEHSGHIPYR DSKLTRLLRE SLGGKTKTCV IATISPSIHC LEETLSTLDY AHRAKNIKNK
0401: PEINQKMMKS AVMKDLYSEI DRLKQEVYAA REKNGIYIPK DRYIQEEAEK KAMAEKIERL ELQSESKDKR VVDLQELYNS QQILTAELSE KLEKTEKKLE
0501: ETEHSLFDLE EKYRQANATI KEKEFVISNL LKSEKSLVER AFQLRTELES ASSDVSNLFS KIERKDKIED GNRFLIQKFQ SQLTQQLELL HKTVASSVTQ
0601: QEVQLKHMEE DMESFVSTKS EATEELRDRL SKLKRVYGSG IEALDNIAVK LDGNSQSTFS SLNSEVSKHS HELENVFKGF ASEADMLLQD LQSSLNKQEE
0701: KLITFAQQQR KAHSRAVDTA RSVSKVTVEF FKTLDTHATK LTGIVEEAQT VNHKKLSEFE NKFEECAANE ERQLLEKVAE LLANSNARKK NLVQMAVHDL
0801: RESASTRTTT LQHEMSTMQD STSSIKAEWS IHMEKTESSH HEDTSAVESG KKAMQEVLLN CLEKTEMSAH QWRKAQESLV SLERNNVASV DSIVRGGMDA
0901: NENLRSQFST AVSSSLDVFD AANSSLLTSI DHSLQLDNDA CTKVNSMIIP CCEDLIELKS DHNHKIIEIT ENAGKCLLDE YVVDEPSCST PKKRPIDIPS
1001: IESIEELRTP ASEELLRAFR DEKLSKQANG DAKQQQQQQQ QHLIRASSLY EAAVSDSRYP LSAVN

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT3G45850]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.