Factsheet for Zm00001d029505_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94693	Sorghum	nucleus	88.74	87.56
KRH57816	Soybean	cytosol	29.28	83.33
KRH66225	Soybean	cytosol	40.54	83.33
Os03t0413000-01	Rice	nucleus	80.63	81.74
TraesCS3A01G026900.1	Wheat	nucleus	72.52	79.7
HORVU7Hr1G105460.1	Barley	nucleus	60.81	78.03
TraesCS3B01G017400.1	Wheat	nucleus	73.42	76.89
KRG88870	Soybean	cytosol	37.39	76.85
HORVU7Hr1G105500.6	Barley	nucleus	60.81	72.97
Zm00001d022099_P001	Maize	nucleus	67.57	70.75
Zm00001d006813_P001	Maize	nucleus	64.41	69.76
Zm00001d001775_P001	Maize	nucleus	22.52	54.95
Zm00001d038397_P005	Maize	nucleus	43.69	54.49
Zm00001d010574_P001	Maize	nucleus	43.24	51.34
Zm00001d009636_P001	Maize	nucleus	29.73	51.16
Zm00001d039957_P001	Maize	nucleus	28.83	46.38
Zm00001d042968_P002	Maize	extracellular, nucleus	39.19	45.79
Zm00001d011915_P001	Maize	nucleus	35.14	45.61
Zm00001d042196_P001	Maize	nucleus	35.14	43.58
Zm00001d030151_P001	Maize	mitochondrion	15.32	41.46
Zm00001d049485_P001	Maize	nucleus	45.5	39.0
Zm00001d042197_P001	Maize	plastid	27.03	36.14
Zm00001d051697_P001	Maize	nucleus	36.94	31.06
Zm00001d017898_P001	Maize	nucleus	36.49	29.14
Zm00001d045772_P001	Maize	nucleus, plastid	28.38	24.05
Zm00001d019101_P001	Maize	nucleus	19.82	22.34
Zm00001d017899_P001	Maize	nucleus	17.12	19.29
Zm00001d012445_P001	Maize	nucleus	36.49	15.34
Zm00001d050242_P002	Maize	plastid	18.47	13.8
Zm00001d032328_P005	Maize	extracellular, plastid	18.02	13.29

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	UniProt:A0A1D6K5M3	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONL98874.1
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0000052370	EnsemblPlantsGene:Zm00001d029505	EnsemblPlants:Zm00001d029505_P001	EnsemblPlants:Zm00001d029505_T001	SEG:seg

Description

Nuclear transcription factor Y subunit B-2

Coordinates

chr1:+:73576189..73576857

Molecular Weight (calculated)

23566.5 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.846

Length

222 amino acids

Sequence
(BLAST)

001: MPDSDNDSGG PSNAGGELSS PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEDYV
101: EPLKHYLHKF REIEGERAAA SAGASGSQQQ QQQGELPRGA ANAAGYAGYG APGSGGMMMM MMGQPMYGGS QPQQQPPPPQ PPQQQQQHQQ HHMAIGGRGG
201: FGQQGGGGGS SSSSGLGRQD RA

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.