CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029505_P001	Maize	nucleus	87.56	88.74
Os03t0413000-01	Rice	nucleus	83.56	85.84
KRH66225	Soybean	cytosol	39.56	82.41
KRH57816	Soybean	cytosol	28.44	82.05
TraesCS3A01G026900.1	Wheat	nucleus	72.89	81.19
TraesCS3B01G017400.1	Wheat	nucleus	73.33	77.83
HORVU7Hr1G105460.1	Barley	nucleus	58.67	76.3
KRG88870	Soybean	cytosol	36.44	75.93
EER99684	Sorghum	nucleus	69.78	72.02
HORVU7Hr1G105500.6	Barley	nucleus	58.67	71.35
KXG22176	Sorghum	nucleus	43.56	54.44
OQU87808	Sorghum	nucleus	39.56	53.94
OQU78466	Sorghum	nucleus	28.89	47.45
EES04176	Sorghum	nucleus	36.44	45.05
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	27.56	42.47
EES14637	Sorghum	nucleus	46.67	38.18
KXG30848	Sorghum	nucleus	36.44	29.71
OQU76250	Sorghum	nucleus	27.11	23.37
EER89161	Sorghum	cytosol, mitochondrion, nucleus	20.0	22.96
EES05602	Sorghum	nucleus	17.78	20.3
EES13767	Sorghum	nucleus	18.22	13.8

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:8070049	UniProt:C5WWL6	InterPro:CBFA_NFYB_domain	EnsemblPlants:EER94693
ProteinID:EER94693	ProteinID:EER94693.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615
ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	EnsemblPlantsGene:SORBI_3001G338700	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS
UniParc:UPI0001A8320B	RefSeq:XP_002467695.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:62635346..62636396

Molecular Weight (calculated)

23608.5 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.767

Length

225 amino acids

Sequence
(BLAST)

001: MPDSDNDSGG PSNAGGELSS PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEDYV
101: DPLKHYLHKF REIEGERAAA SAGASGSNTA VQHQQQGDVV QRGAANAGGY AGYGGAPGAA GMMMMMGQPM YGSPQQQQPP PPPPSQQQQQ QHHMAMGGRG
201: GFGHQGGGGG GGSSSSSGLG RQDRA

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.