CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022099_P001	Maize	nucleus	88.53	91.04
Zm00001d006813_P001	Maize	nucleus	80.73	85.85
KRH57816	Soybean	cytosol	29.36	82.05
KRH66225	Soybean	cytosol	39.91	80.56
HORVU2Hr1G032320.1	Barley	nucleus	79.82	77.68
TraesCS2B01G199800.1	Wheat	nucleus	79.82	77.33
TraesCS2D01G180700.1	Wheat	nucleus	79.36	76.89
TraesCS2A01G173500.1	Wheat	nucleus	78.9	76.11
KRG88870	Soybean	cytosol	37.16	75.0
EER94693	Sorghum	nucleus	72.02	69.78
KXG22176	Sorghum	nucleus	44.04	53.33
OQU87808	Sorghum	nucleus	38.99	51.52
OQU78466	Sorghum	nucleus	29.82	47.45
EES04176	Sorghum	nucleus	35.32	42.31
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	27.52	41.1
EES14637	Sorghum	nucleus	48.62	38.55
KXG30848	Sorghum	nucleus	37.16	29.35
OQU76250	Sorghum	nucleus	28.44	23.75
EER89161	Sorghum	cytosol, mitochondrion, nucleus	21.1	23.47
EES05602	Sorghum	nucleus	18.35	20.3
EES13767	Sorghum	nucleus	20.18	14.81

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EntrezGene:8079169	UniProt:C5XDX7	InterPro:CBFA_NFYB_domain	EnsemblPlants:EER99684
ProteinID:EER99684	ProteinID:EER99684.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685
PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	EnsemblPlantsGene:SORBI_3002G369800	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0001A83D20
RefSeq:XP_002463163.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:72887523..72888813

Molecular Weight (calculated)

22730.7 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.598

Length

218 amino acids

Sequence
(BLAST)

001: MPDSDNESGG PSNADFSSPR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYIEP
101: LKLYLHKFRE LEGEKAATGV AGSSSGVSQP HRESTPSSAH NGAGGPVGGY GMYGGAGGGG SGMIMMMGQP MYGGSPPAAS GYPQPPHHQM VMGGKGGAYG
201: HGGGSSSSPS GLGRQDRL

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.