Factsheet for Zm00001d019101_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89161	Sorghum	cytosol, mitochondrion, nucleus	73.1	73.47
Zm00001d001775_P001	Maize	nucleus	12.18	26.37
Zm00001d030151_P001	Maize	mitochondrion	10.66	25.61
Zm00001d009636_P001	Maize	nucleus	16.75	25.58
Zm00001d039957_P001	Maize	nucleus	17.26	24.64
Zm00001d011915_P001	Maize	nucleus	20.3	23.39
Zm00001d038397_P005	Maize	nucleus	19.8	21.91
Zm00001d042196_P001	Maize	nucleus	19.29	21.23
Zm00001d042197_P001	Maize	plastid	17.77	21.08
Zm00001d017899_P001	Maize	nucleus	20.81	20.81
Zm00001d022099_P001	Maize	nucleus	22.34	20.75
Zm00001d010574_P001	Maize	nucleus	19.29	20.32
Zm00001d042968_P002	Maize	extracellular, nucleus	19.29	20.0
Zm00001d029505_P001	Maize	nucleus	22.34	19.82
Zm00001d006813_P001	Maize	nucleus	20.3	19.51
Zm00001d051697_P001	Maize	nucleus	23.35	17.42
Zm00001d017898_P001	Maize	nucleus	23.86	16.91
Zm00001d049485_P001	Maize	nucleus	20.3	15.44
Zm00001d045772_P001	Maize	nucleus, plastid	18.78	14.12
Zm00001d050242_P002	Maize	plastid	18.27	12.12
Zm00001d032328_P005	Maize	extracellular, plastid	17.77	11.63
Zm00001d012445_P001	Maize	nucleus	21.32	7.95

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103632093	MapMan:15.5.51.2	UniProt:A0A1D6HV39	InterPro:CBFA_NFYB_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM52156.1	PFAM:PF00808	PANTHER:PTHR11064
PANTHER:PTHR11064:SF82	SUPFAM:SSF47113	UniParc:UPI0001E40123	EnsemblPlantsGene:Zm00001d019101	EnsemblPlants:Zm00001d019101_P001	EnsemblPlants:Zm00001d019101_T001
SEG:seg	:	:	:	:	:

Description

CCAAT-DR1-transcription factor 14Nuclear transcription factor Y subunit B-6

Coordinates

chr7:-:16745486..16746406

Molecular Weight (calculated)

21228.9 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.479

Length

197 amino acids

Sequence
(BLAST)

001: MSKAQGSNDH QHEHEDPEGS KPLEEYTIPK GTITRIMRQV LPQDSRVTGG AKETMDQCIV QFSTALVRAA TQECRRDRRL TITADDLIVG FANLGLADYV
101: QPMSVYLRLY RETVNNQQQA VAPPSPTVQR GTTTAVPPPP PNLTLQLGLP SVPDVTELAR DTDVYALWHG AAPAAGSTSA SSVAPMPPPA ADGDEDE

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.