Factsheet for Solyc05g052280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
extracellular: 22892874
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030402	Potato	extracellular	97.83	97.83
Solyc06g050440.2.1	Tomato	extracellular	85.4	86.21
KRH64171	Soybean	extracellular	80.12	80.62
KRH53775	Soybean	extracellular	80.12	80.62
VIT_13s0067g02360.t01	Wine grape	endoplasmic reticulum, extracellular	76.09	76.32
AT5G05340.1	Thale cress	extracellular	76.09	75.62
KRH73217	Soybean	nucleus	75.78	75.31
KRH14872	Soybean	nucleus	74.22	73.31
CDY14118	Canola	extracellular	72.98	72.53
CDY04948	Canola	extracellular	72.36	71.91
Bra028761.1-P	Field mustard	extracellular	72.36	71.91
CDX98835	Canola	extracellular	72.05	71.38
CDX70158	Canola	extracellular	72.05	71.38
Bra009105.1-P	Field mustard	extracellular	60.87	70.76
CDY52147	Canola	extracellular	65.22	64.81
Bra005850.1-P	Field mustard	extracellular	65.22	64.81
Solyc03g025380.2.1	Tomato	extracellular	63.98	64.38
CDX80957	Canola	extracellular	64.29	63.89
Solyc05g050880.2.1	Tomato	extracellular	62.11	63.09
Solyc09g018590.1.1	Tomato	extracellular	48.14	62.0
Solyc06g082420.2.1	Tomato	extracellular	59.32	61.22
Solyc10g076240.1.1	Tomato	nucleus	58.7	59.62
Solyc07g055190.2.1	Tomato	extracellular	59.01	59.56
Solyc10g076210.1.1	Tomato	extracellular	58.7	59.25
Solyc10g076190.1.1	Tomato	extracellular	58.39	58.75
Solyc10g076220.1.1	Tomato	extracellular	57.45	57.99
Solyc11g018800.1.1	Tomato	extracellular	54.35	54.86
Solyc10g075120.1.1	Tomato	extracellular	34.47	50.68

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037
GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac
InterPro:IPR002016	UniProt:K4C1Q9	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	ScanProsite:PS00435
ScanProsite:PS00436	PFscan:PS50873	PANTHER:PTHR31388	PANTHER:PTHR31388:SF24	InterPro:Peroxidase_pln	InterPro:Peroxidases_AS
InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g052280.2	EnsemblPlants:Solyc05g052280.2.1
TMHMM:TMhelix	UniParc:UPI0002765D00	SEG:seg	:	:	:

Description

Peroxidase [Source:UniProtKB/TrEMBL;Acc:K4C1Q9]

Coordinates

chr5:-:62559763..62562832

Molecular Weight (calculated)

34909.4 Da

IEP (calculated)

10.098

GRAVY (calculated)

-0.248

Length

322 amino acids

Sequence
(BLAST)

001: MASSKNNTMV FLFLLVTLLI GSSSAQLSTN FYSKSCPKLY QTIKSTVQSA INKETRMGAS LLRLFFHDCF VNGCDGSLLL DDTSSFTGEK RAAPNVNSVR
101: GFEVIDNIKS AVEKACPGIV SCADILAVTA RDSVVILGGP NWNVKLGRRD ARTASQGAAN SSIPAPTFNL NRLISSFSAV GLSTKDMVAL SGAHTIGQAR
201: CTTFRARIYN ETNNIDSTFA RTRQNSCPRN SGSGDNNLAP LDLQTPSKFD NNYFKNLVNK KGLLHSDQQL FNGGSADSIV RSYINNPSSF NSDFVTAMIK
301: MGDIRPLTGS NGEIRKNCRR RN

Best Arabidopsis Sequence Match ( AT5G05340.1 )
(BLAST)

001: MASNKLISIL VLVVTLLLQG DNNYVVEAQL TTNFYSTSCP NLLSTVQTAV KSAVNSEARM GASILRLFFH DCFVNGCDGS ILLDDTSSFT GEQNAAPNRN
101: SARGFNVIDN IKSAVEKACP GVVSCADILA IAARDSVVAL GGPNWNVKVG RRDARTASQA AANSNIPAPT SSLSQLISSF SAVGLSTRDM VALSGAHTIG
201: QSRCTNFRAR IYNETNINAA FATTRQRTCP RASGSGDGNL APLDVTTAAS FDNNYFKNLM TQRGLLHSDQ VLFNGGSTDS IVRGYSNNPS SFNSDFTAAM
301: IKMGDISPLT GSSGEIRKVC GRTN

Arabidopsis Description

PER52Peroxidase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLC0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.