Factsheet for PGSC0003DMT400030402

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052280.2.1	Tomato	extracellular	97.83	97.83
PGSC0003DMT400036487	Potato	extracellular	85.09	85.89
KRH53775	Soybean	extracellular	80.12	80.62
KRH64171	Soybean	extracellular	80.12	80.62
VIT_13s0067g02360.t01	Wine grape	endoplasmic reticulum, extracellular	77.02	77.26
KRH73217	Soybean	nucleus	76.09	75.62
AT5G05340.1	Thale cress	extracellular	75.47	75.0
KRH14872	Soybean	nucleus	74.53	73.62
CDY14118	Canola	extracellular	72.67	72.22
Bra028761.1-P	Field mustard	extracellular	72.05	71.6
CDY04948	Canola	extracellular	72.05	71.6
CDX70158	Canola	extracellular	71.74	71.08
CDX98835	Canola	extracellular	71.74	71.08
Bra009105.1-P	Field mustard	extracellular	60.56	70.4
Bra005850.1-P	Field mustard	extracellular	64.91	64.51
CDY52147	Canola	extracellular	64.91	64.51
PGSC0003DMT400040868	Potato	extracellular	63.66	64.26
PGSC0003DMT400068341	Potato	extracellular	63.04	64.24
CDX80957	Canola	extracellular	64.29	63.89
PGSC0003DMT400052649	Potato	cytosol	43.48	62.5
PGSC0003DMT400018003	Potato	extracellular	52.8	62.27
PGSC0003DMT400078121	Potato	extracellular	57.76	59.62
PGSC0003DMT400053618	Potato	plastid	55.28	59.33
PGSC0003DMT400053613	Potato	cytosol	45.96	59.2
PGSC0003DMT400053615	Potato	cytosol	45.65	58.8
PGSC0003DMT400050890	Potato	cytosol	45.96	58.73
PGSC0003DMT400071003	Potato	cytosol, plastid	54.35	58.33
PGSC0003DMT400031195	Potato	cytosol	53.73	57.86
PGSC0003DMT400017114	Potato	extracellular	44.1	55.91
PGSC0003DMT400039065	Potato	extracellular	54.04	54.55
PGSC0003DMT400053611	Potato	cytosol	29.19	52.51

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:102582282	MapMan:35.1	ProteinID:AFV07575
ProteinID:AFV07575.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114
GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	EMBL:JX428801	UniProt:M1AU65
PFAM:PF00141	EnsemblPlantsGene:PGSC0003DMG400011640	PGSC:PGSC0003DMG400011640	EnsemblPlants:PGSC0003DMT400030402	PRINTS:PR00458	PRINTS:PR00461
ScanProsite:PS00435	ScanProsite:PS00436	PFscan:PS50873	PANTHER:PTHR31388	PANTHER:PTHR31388:SF24	InterPro:Peroxidase_pln
InterPro:Peroxidases_AS	InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00029522AB	RefSeq:XP_006365326.1	SEG:seg	:	:	:

Description

Peroxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400011640]

Coordinates

chr5:-:47534530..47537782

Molecular Weight (calculated)

34843.3 Da

IEP (calculated)

10.187

GRAVY (calculated)

-0.242

Length

322 amino acids

Sequence
(BLAST)

001: MASSKNNTMV FLFLLVTLLI GSSSAQLSTS FYSKSCPKLY QTVKSTVQSA IKKETRMGAS LLRLFFHDCF VNGCDGSLLL DDTSSFTGEK RAAPNVNSVR
101: GFEVIDNIKS AVEKACPGVV SCADILAVTA RDSVVILGGP NWNVKLGRRD ARTASQGAAN SSIPAPTFNL NRLISSFSAV GLSTKDMVAL SGSHTIGQAR
201: CTTFRARIYN ETNSIDSSFA RTRQNSCPRN SGSGDNNLAP LDLQTPSKFD NNYFKNLVNK KGLLHSDQQL FNGGSADSIV RSYINNPSSF NSDFVTAMIK
301: MGDIRPLTGS NGEIRKNCRR RN

Best Arabidopsis Sequence Match ( AT5G05340.1 )
(BLAST)

001: MASNKLISIL VLVVTLLLQG DNNYVVEAQL TTNFYSTSCP NLLSTVQTAV KSAVNSEARM GASILRLFFH DCFVNGCDGS ILLDDTSSFT GEQNAAPNRN
101: SARGFNVIDN IKSAVEKACP GVVSCADILA IAARDSVVAL GGPNWNVKVG RRDARTASQA AANSNIPAPT SSLSQLISSF SAVGLSTRDM VALSGAHTIG
201: QSRCTNFRAR IYNETNINAA FATTRQRTCP RASGSGDGNL APLDVTTAAS FDNNYFKNLM TQRGLLHSDQ VLFNGGSTDS IVRGYSNNPS SFNSDFTAAM
301: IKMGDISPLT GSSGEIRKVC GRTN

Arabidopsis Description

PER52Peroxidase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLC0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.