Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G183700.1 | Wheat | nucleus | 93.33 | 94.84 |
| TraesCS2B01G202700.2 | Wheat | nucleus | 92.7 | 92.41 |
| HORVU2Hr1G032690.1 | Barley | cytosol | 50.48 | 67.37 |
| Os07t0602900-01 | Rice | nucleus | 65.08 | 64.26 |
| EER99676 | Sorghum | nucleus | 55.24 | 50.88 |
| Zm00001d022069_P001 | Maize | nucleus | 48.89 | 50.16 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 22.86 | 29.27 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.38 | 19.96 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G176300.1 | EnsemblPlantsGene:TraesCS2A01G176300 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF9 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | SEG:seg | MapMan:15.5.53.3 |
Description
No Description!
Coordinates
chr2A:+:135884811..135886461
Molecular Weight (calculated)
33579.8 Da
IEP (calculated)
10.021
GRAVY (calculated)
-0.648
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDFLGRF GGEKGAASDK AGGGAGEADE VVELSLGLSL GGCFGANSGR DAKKPRLVRS SSLAAMCSLP GTSDDLAAAT PPPAPLMRTS SLPTETEEER
101: WRRREMQSLK RLQAKRKRLE RRTSMNSGKS GGSSSRDDAQ EPLYPSAFQL RRSVVDQGNP SSSMPEQGSG DGAEVKSTSS MEISSDNNNN ASNQNKSLPP
201: PAPSPAAGKL PNGIVKEQPP LRTLRSLTMR TTSTGDLRKS MMEDMPMVSS KVDGPNGKKI DGFLYKYRKG EEVRIVCVCH GNFLTPAEFV KHAGGGDVTN
301: PLRHIVVNPS PSVFL
101: WRRREMQSLK RLQAKRKRLE RRTSMNSGKS GGSSSRDDAQ EPLYPSAFQL RRSVVDQGNP SSSMPEQGSG DGAEVKSTSS MEISSDNNNN ASNQNKSLPP
201: PAPSPAAGKL PNGIVKEQPP LRTLRSLTMR TTSTGDLRKS MMEDMPMVSS KVDGPNGKKI DGFLYKYRKG EEVRIVCVCH GNFLTPAEFV KHAGGGDVTN
301: PLRHIVVNPS PSVFL
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.