Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022069_P001 | Maize | nucleus | 57.02 | 63.52 |
| Os07t0602900-01 | Rice | nucleus | 55.56 | 59.56 |
| TraesCS2D01G183700.1 | Wheat | nucleus | 50.29 | 55.48 |
| TraesCS2A01G176300.1 | Wheat | nucleus | 50.88 | 55.24 |
| TraesCS2B01G202700.2 | Wheat | nucleus | 50.29 | 54.43 |
| KXG39123 | Sorghum | nucleus | 43.86 | 48.08 |
| HORVU2Hr1G032690.1 | Barley | cytosol | 31.87 | 46.19 |
| EER92642 | Sorghum | nucleus | 33.33 | 28.93 |
| EER89528 | Sorghum | nucleus | 28.07 | 26.89 |
Protein Annotations
| MapMan:15.5.53.3 | EntrezGene:8060656 | UniProt:C5XDU7 | ncoils:Coil | EnsemblPlants:EER99676 | ProteinID:EER99676 |
| ProteinID:EER99676.1 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:Jas |
| InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF9 | EnsemblPlantsGene:SORBI_3002G367100 | unigene:Sbi.1892 | UniParc:UPI0001A83D18 | RefSeq:XP_002463155.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:72683938..72687311
Molecular Weight (calculated)
35417.8 Da
IEP (calculated)
9.827
GRAVY (calculated)
-0.465
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDFLGGF GRDGGQAPAG GAAARTCGES DGIELSLGLS LGGCFGADPS QDGKELRLQR SSSIASICSL PPTSCGAQDA AAAAATAPPP DQLLRTSSLP
101: AEYMEDRLRR RAMQSQRRLE AKRKRLERRN SMNSGRPVPA AGGGAAGRDE GLDHTVPSGF QLRRTVAALT TAGSATPSRP PQGLAERRAE ASSPAAAPTS
201: SDGVSAGQSS SSLVPKEATT AGGRPSLDGG AARHEQPPPP APLRTLRSLT MRTASTGDLR NTMAEDMPMV SYKAAEGPSA SGGGRKIDGF LYKYRKGEEV
301: RIVCVCHGSF LTPAEFVKHA GGGEVTNPLR HIVVNPQQSV FL
101: AEYMEDRLRR RAMQSQRRLE AKRKRLERRN SMNSGRPVPA AGGGAAGRDE GLDHTVPSGF QLRRTVAALT TAGSATPSRP PQGLAERRAE ASSPAAAPTS
201: SDGVSAGQSS SSLVPKEATT AGGRPSLDGG AARHEQPPPP APLRTLRSLT MRTASTGDLR NTMAEDMPMV SYKAAEGPSA SGGGRKIDGF LYKYRKGEEV
301: RIVCVCHGSF LTPAEFVKHA GGGEVTNPLR HIVVNPQQSV FL
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.