CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047290_P001	Maize	nucleus	73.72	79.86
Zm00001d029529_P001	Maize	nucleus	68.27	73.2
Os03t0419100-01	Rice	nucleus	66.03	67.1
EER99676	Sorghum	nucleus	48.08	43.86
EER92642	Sorghum	nucleus	38.46	30.46
EER89528	Sorghum	nucleus	34.29	29.97

Protein Annotations

EnsemblPlants:KXG39123	EnsemblPlantsGene:SORBI_3001G335400	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil	PANTHER:PTHR31413
PANTHER:PTHR31413:SF9	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	ProteinID:KXG39123	ProteinID:KXG39123.1
SEG:seg	UniParc:UPI0001FCC794	UniProt:A0A1B6QMI0	MapMan:15.5.53.3	:	:

Description

hypothetical protein

Coordinates

chr1:-:62403207..62408007

Molecular Weight (calculated)

32904.5 Da

IEP (calculated)

10.584

GRAVY (calculated)

-0.602

Length

312 amino acids

Sequence
(BLAST)

001: MASRDFLRVF GEGSGSGSPK AANAGAGGQS DDVELSLGLS LGGRFGTDAA AKRPRLARSS SIASVCSVSS LHGEGDADAD PSPAAPLPLL RTTSLPTETE
101: EERWRRREMQ SRRRLEARRK RVERRNSSMA SLVPAGPKPA AAAADANANA AVGSGRRSNA SQGSNSVSTT EQGIGGSAIN QSTDARSPST SDNTNQNSML
201: PPTKAAEKPL NGTPTEQPRL RTLGSLTTRT SSTSDIRKLM MEDMPMVSSK VEGPNTRRID GFLYRYKKGE DVRIVCVCHG SFLTPAEFVK HAGGGDVSNP
301: LRHIVVNPAP FS

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.