Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047290_P001 | Maize | nucleus | 63.19 | 67.36 |
| KXG39123 | Sorghum | nucleus | 67.1 | 66.03 |
| Zm00001d029529_P001 | Maize | nucleus | 57.0 | 60.14 |
| Os07t0602900-01 | Rice | nucleus | 54.4 | 52.35 |
| Os03t0214200-01 | Rice | nucleus | 37.78 | 28.93 |
Protein Annotations
| MapMan:15.5.53.3 | EntrezGene:4333126 | ProteinID:AAR01695.1 | ProteinID:ABF96648.1 | ProteinID:ABF96649.1 | EMBL:AK073482 |
| EMBL:AK119969 | ProteinID:BAF12292.1 | ProteinID:BAS84725.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | EnsemblPlantsGene:Os03g0419100 | EnsemblPlants:Os03t0419100-01 |
| PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF9 | UniProt:Q10JI3 |
| UniParc:UPI0000DB4693 | RefSeq:XP_015632575.1 | SEG:seg | : | : | : |
Description
Protein of unknown function DUF1675 family protein. (Os03t0419100-01);Protein of unknown function DUF1675 family protein. (Os03t0419100-02)
Coordinates
chr3:+:17449417..17452606
Molecular Weight (calculated)
32441.1 Da
IEP (calculated)
10.134
GRAVY (calculated)
-0.614
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDFLGVF GGGGGERRAA NGSGSAVGGE SDEIELSLGL SLGGRFGTDM SPDAKRARLA RSSSIASVCS VSAADGDPSP AAPLPLLRTS SLPTETEEER
101: WRRREMQNRR RLEARRKRLE RRISVGSSSV PNKPGREDGG DGAVNRLQLR RSIGSQGSSS ANPQDQGPDG SAICQSTEAR SPSTSDDTNQ NSALPPTAST
201: GKPLNGTVTQ QSPLRTLGSL TMRTSSTGDI GKIMMDMPMV SSKVEGPNGR KIDGFLYKYR KGEDVSIMCV CHGKFHSPAE FVKHAGGGDV SNPLRHIVVN
301: PSPSVFL
101: WRRREMQNRR RLEARRKRLE RRISVGSSSV PNKPGREDGG DGAVNRLQLR RSIGSQGSSS ANPQDQGPDG SAICQSTEAR SPSTSDDTNQ NSALPPTAST
201: GKPLNGTVTQ QSPLRTLGSL TMRTSSTGDI GKIMMDMPMV SSKVEGPNGR KIDGFLYKYR KGEDVSIMCV CHGKFHSPAE FVKHAGGGDV SNPLRHIVVN
301: PSPSVFL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.