Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029529_P001 | Maize | nucleus | 74.65 | 73.88 |
| KXG39123 | Sorghum | nucleus | 79.86 | 73.72 |
| Os03t0419100-01 | Rice | nucleus | 67.36 | 63.19 |
| Zm00001d022069_P001 | Maize | nucleus | 49.65 | 46.58 |
| Zm00001d048085_P002 | Maize | nucleus | 35.42 | 25.95 |
Protein Annotations
| EntrezGene:100283969 | MapMan:15.5.53.3 | UniProt:A0A1Q1CXY5 | ProteinID:AQL06090.1 | UniProt:B6TNQ7 | ncoils:Coil |
| EMBL:EU966622 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam |
| InterPro:Ninja_motif | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF9 |
| UniParc:UPI000182D4EB | EnsemblPlantsGene:Zm00001d047290 | EnsemblPlants:Zm00001d047290_P001 | EnsemblPlants:Zm00001d047290_T001 | SEG:seg | : |
Description
Ninja-family protein 6
Coordinates
chr9:+:125663367..125665833
Molecular Weight (calculated)
30905.4 Da
IEP (calculated)
10.495
GRAVY (calculated)
-0.662
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDFLRVF GAGEGAGPPG DAGAGQPDDD ELSLGLSLGG RFGTDAKRPR LARSSSIASV CSVSSLHADP SPAAPLPLLR TTSLPTETEE ERWRRREMQS
101: RRRLEARRKR VERRNSMGSV SVAPADAVSG RRSNASQGSN SASTTEQGIG GSMFNQSADA KSPSTSDNRN QNDMLPPTKA AEKPLNGTAT EQQPRLRTLG
201: SLTTRTGSTS DIRKLMMEDM PMVSSKVEGP NARRIDGFLY RYKKGEDVRI VCVCHGSFLT PAEFVKHAGG GDVPNPLRHI VVNPAPFS
101: RRRLEARRKR VERRNSMGSV SVAPADAVSG RRSNASQGSN SASTTEQGIG GSMFNQSADA KSPSTSDNRN QNDMLPPTKA AEKPLNGTAT EQQPRLRTLG
201: SLTTRTGSTS DIRKLMMEDM PMVSSKVEGP NARRIDGFLY RYKKGEDVRI VCVCHGSFLT PAEFVKHAGG GDVPNPLRHI VVNPAPFS
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.