Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047290_P001 | Maize | nucleus | 73.88 | 74.65 |
| KXG39123 | Sorghum | nucleus | 73.2 | 68.27 |
| Os03t0419100-01 | Rice | nucleus | 60.14 | 57.0 |
| Zm00001d022069_P001 | Maize | nucleus | 48.8 | 46.25 |
| Zm00001d048085_P002 | Maize | nucleus | 35.05 | 25.95 |
Protein Annotations
| EnsemblPlants:Zm00001d029529_P001 | EnsemblPlants:Zm00001d029529_T001 | EnsemblPlantsGene:Zm00001d029529 | EntrezGene:103636411 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif |
| ncoils:Coil | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF9 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 |
| ProteinID:ONL98917.1 | SEG:seg | UniParc:UPI000221CE4F | UniProt:A0A1D6K5R7 | MapMan:15.5.53.3 | : |
Description
Ninja-family protein AFP3
Coordinates
chr1:+:74918081..74921222
Molecular Weight (calculated)
31122.4 Da
IEP (calculated)
10.694
GRAVY (calculated)
-0.636
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDFLRVF GAGAGHQDDA AAAAGRTDDV ELSLGLSLGG RFGTTDAKRP RLARSSSIAS VCSVSSLHAD ADAAPLPLLR TTSLPTETEE ERWRRRETQS
101: RRRLEARQKR VERRNSMASL APAVVGGTGR RSNASQGSNS ASTTEQGIGG SASNQSTDAR SPSSTSDNNT NQNNMLPPTT KAAEKPLNGT ATEQPQPRLR
201: TLGSLTTRTS STGDIRKLMM EDMPMVSSKV EGPNARRIDG FLYRYKKGED VRIVCVCHGS FLTPAEFVKH AGGGDVSNPL RHIVVNPAPF S
101: RRRLEARQKR VERRNSMASL APAVVGGTGR RSNASQGSNS ASTTEQGIGG SASNQSTDAR SPSSTSDNNT NQNNMLPPTT KAAEKPLNGT ATEQPQPRLR
201: TLGSLTTRTS STGDIRKLMM EDMPMVSSKV EGPNARRIDG FLYRYKKGED VRIVCVCHGS FLTPAEFVKH AGGGDVSNPL RHIVVNPAPF S
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.